Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq112 156 6e-33 seq37 147 3e-30 >seq112 Length=360945 Score = 156 bits (172), Expect = 6e-33 Identities = 292/434 (67%), Gaps = 0/434 (0%) Strand=Plus/Plus Query 202760 ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGT 202819 ||||| ||||| | | |||||||| || |||| || | |||||| |||||||| Sbjct 301988 ACATCGAATTTTCTTTCACATCCTTTGTAGTTCATGTAACGAATTTTTCCAAATATCTCA 302047 Query 202820 CTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCA 202879 | ||||||||| || ||| ||||| ||||| ||||||||||||||||||||||| ||| Sbjct 302048 CGCTCTTTCCATCCTTGATCGTGAATTCCACAGATTGACCACATACATCCAACATAACCA 302107 Query 202880 TTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCT 202939 || ||||| | |||||| || || | ||||| | || | || Sbjct 302108 TTGGGATCTCTTCCATCCATGCTGTACCTGTCATTGAGATAGATTGACCAGGCTAGGGCA 302167 Query 202940 TCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCA 202999 || ||||||| | |||| || | |||||||||||||| ||||| || | ||||| Sbjct 302168 TCCTCTGGTGTTCGGCTCCACTCGAGAATTTTTTTAGCCCAGTACATCCTCATGAATCCA 302227 Query 203000 TGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTT 203059 || ||||| || | | | || || || || | ||||||||| | | || || || Sbjct 302228 TGAATTTTTCCCTCTCTCACCAACTGATTCTGGGCTGCATTCCAGAGGTCCTCGTGGGTC 302287 Query 203060 AATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTTCA 203119 | | | || | || | || | || || | ||| |||| || | || | Sbjct 302288 TGGGAAGTCTCGAATTCTTCTAGTGTGTAAATCCACTCTCTTTTATCTTTCCTGTGAGCG 302347 Query 203120 TTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTATAA 203179 | || |||| ||| ||||| |||| || | || ||||||||||| ||||| ||| Sbjct 302348 TCCAGGGTTTGTATAGCCCACGCATTACTGCCCTCGATCTTATCGTAATTCTCATTGTAA 302407 Query 203180 TAACAAAAATTATC 203193 ||||| |||||||| Sbjct 302408 TAACAGAAATTATC 302421 >seq37 Length=1171872 Score = 147 bits (162), Expect = 3e-30 Identities = 181/246 (74%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| ||||||| || || |||||||| || || | ||| |||| ||| Sbjct 188891 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATTACACTGGAGGTTGAGGCATC 188950 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || |||||||||||||||||||| ||||| ||||| Sbjct 188951 TGACACCATCGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGTATCCCACCAGATCA 189010 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| || |||||||| |||||| | |||| | ||||| || Sbjct 189011 ACAGCGTTTGATCTTTGCCGGTAAACAATTGGAGGATGGAAGAACTCTTTCCGATTACAA 189070 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||||||||||||||| || | || | ||| | ||| | ||||| || || | | ||| Sbjct 189071 TATTCAAAAAGAATCCACCCTCCACCTCGTTCTCCGTCTTCGAGGAGGCATGCAGATATT 189130 Query 124777 CATAAA 124782 | |||| Sbjct 189131 CGTAAA 189136 Score = 129 bits (142), Expect = 9e-25 Identities = 177/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| ||||||| || || |||||||| || || | ||| | || || Sbjct 188663 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTC 188722 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || || || ||||| || || || || || || Sbjct 188723 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 188782 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| || || || |||||||| |||||| | |||| | |||||| || Sbjct 188783 GCAACGTCTTATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAA 188842 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||||||||| ||||| ||| | || ||||| ||||| | || ||||| || ||| ||| Sbjct 188843 TATTCAAAAGGAATCTACTCTTCACTTGGTCCTACGTCTTCGTGGTGGAATGCAAATATT 188902 Query 124777 CATAAA 124782 | |||| Sbjct 188903 CGTAAA 188908 Score = 95.1 bits (104), Expect = 2e-14 Identities = 167/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || || || || || || | || | || || Sbjct 189347 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACACTTGAAGTAGAGGCCTC 189406 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || || || || ||||| || || || || |||||||| Sbjct 189407 TGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCA 189466 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || || |||||| | |||||| | |||| | ||| || || Sbjct 189467 GCAACGTTTGATCTTCGCTGGTAAACAACTGGAGGATGGCAGAACTCTCTCAGACTACAA 189526 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAATT 124776 |||||||||||||| || | || |||||| | ||| | ||||||| | ||||| || Sbjct 189527 CATTCAAAAAGAATCGACCCTTCACTTGGTTCTTCGTCTCAGAGGTGGATTCTAAAATTT 189586 Query 124777 CA 124778 || Sbjct 189587 CA 189588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755446160185600