Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq112 120 6e-22 seq64 100 5e-16 >seq112 Length=360945 Score = 120 bits (132), Expect = 6e-22 Identities = 297/447 (66%), Gaps = 4/447 (1%) Strand=Plus/Minus Query 189264 CGTTTATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACA 189323 ||||||| || || ||| || || || ||| | |||||||| ||||| || || Sbjct 302459 CGTTTATGGAGGAGGCAATCGTCAGGAGGGAATTGAGCGATAATTTCTGTTATTACAATG 302400 Query 189324 AACATTATGATAGTATCCAGTCTACTCATTCATGGGCCAGAAAAACATTAGAAGATCACA 189383 | |||| |||| ||| || | | || | ||||| | | |||| | || | ||||| Sbjct 302399 AGAATTACGATAAGATCGAGGGCAGTAATGCGTGGGCTATACAAACCCTGGACGCTCACA 302340 Query 189384 TTAATGATCCTAGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATG 189443 || ||| ||| ||| || || | | || || |||| | | | || || | Sbjct 302339 GGAAAGATAAAAGAGAGTGGATTTACACACTAGAAGAATTCGAGACTTCCCAGACCCACG 302280 Query 189444 ATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTT 189503 | || ||||| || | || | ||| |||||||||| |||||||| ||| | || Sbjct 302279 AGGACCTCTGGAATGCAGCCCAGAATCAGTTGGTGAGAGAGGGAAAAATTCATGGATTCA 302220 Query 189504 TACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGA 189563 | | ||||| |||||||| || || || || |||| ||||||| || || || | | Sbjct 302219 TGAGGATGTACTGGGCTAAAAAAATTCTCGAGTGGAGCCGAACACCAGAGGATGCCCT-A 302161 Query 189564 GTTATAGT--ATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATA 189621 | | || |||||| | || ||| |||| | || || | ||||| || || || Sbjct 302160 GCC-TGGTCAATCTATCTCAATGACAGGTACAGCATGGATGGAAGAGATCCCAATGGTTA 302102 Query 189622 CGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGAT 189681 || || ||||||||||| || || ||| | |||||| || |||||||| | ||| Sbjct 302101 TGTTGGATGTATGTGGTCAATCTGTGGAATTCACGATCAAGGATGGAAAGAGCGTGAGAT 302042 Query 189682 ATTTGGAAAGATAAGATATATGAATTA 189708 ||||||||| || | || ||||| || Sbjct 302041 ATTTGGAAAAATTCGTTACATGAACTA 302015 >seq64 Length=808431 Score = 100 bits (110), Expect = 5e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 135636 CGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTT 135695 ||||||||| | ||||| || ||| | |||||| ||| | ||| | || || || || Sbjct 754916 CGATCCTGTACTTCATATTGATCTTGCCAAATGGGCTGATTTATTTCTCATTGCTCCATT 754975 Query 135696 AACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTAT 135755 | || ||||| | | |||| | ||| ||| || || |||||| |||| || | | Sbjct 754976 AGATGCCAATACTATGGGAAAACTCGCTTCTGGCATTTGTGATAATATACTCACCTGCGT 755035 Query 135756 TGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTAT 135815 || |||||||||||| | | || ||||| | ||||| ||||| ||||| ||| || Sbjct 755036 TGCTAGAGCCTGGGATCCTATTAAGCCACTGCTATTCTGCCCTGCCATGAACACTAAAAT 755095 Query 135816 GTGGGAACATCCTATTAC 135833 |||||| ||||| |||| Sbjct 755096 GTGGGAGCATCCCGTTAC 755113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923184775361680