Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq425 127 2e-24 seq17 111 2e-19 seq2 96.9 4e-15 seq37 95.1 1e-14 seq47 84.2 3e-11 seq3 84.2 3e-11 >seq425 Length=33725 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | ||| | || ||||| || | ||| ||||| ||||| |||||||||| Sbjct 29695 CCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAG 29754 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||||||||||||||| || || | ||| ||||| | || Sbjct 29755 AGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 29814 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||||| |||||| ||||| | | | |||||| | || || Sbjct 29815 ATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACC 29874 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| ||||||||||| |||||||| || || |||||||| ||||| || Sbjct 29875 TCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCATGTT 29924 >seq17 Length=1605837 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||| || ||||||||||||| ||||| || |||| || Sbjct 83783 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83842 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| || |||||||| || | || ||||||||| | || | | |||||||||| | Sbjct 83843 AGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 83902 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 ||||| |||| || | | ||||| || || || || | || |||||||| Sbjct 83903 ATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 83962 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||| ||||| Sbjct 83963 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || |||| || ||||| || |||||||| Sbjct 83572 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAA 83631 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | || ||||||||| | || | | ||| |||||| |||||| |||| | Sbjct 83632 GATCAATCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATT 83691 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || || | ||||||||||| || || || ||||| || Sbjct 83692 TTCGATGGTGTCTGACGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTCTTGAC 83751 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 83752 GAAGATCTGCAT 83763 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||||| || || || |||| || ||||| || |||||||| Sbjct 82988 TCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAG 83047 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || ||||||||| | || | | |||||||||| |||||| |||| | Sbjct 83048 ATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTT 83107 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | || || || | ||||||||||| || || || ||||| || Sbjct 83108 TCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACG 83167 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 83168 AAGATCTGCAT 83178 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||||| || || || |||| || ||||| || |||||||| Sbjct 83345 TCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAG 83404 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || ||||||||| | || | | |||||||||| |||||| |||| | Sbjct 83405 ATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTT 83464 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | || || || | ||||||||||| || || || ||||| || Sbjct 83465 TCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACG 83524 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 83525 AAGATCTGCAT 83535 >seq2 Length=2705631 Score = 96.9 bits (106), Expect = 4e-15 Identities = 75/87 (86%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1056129 AAAAAATCTCTCT--GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 1056072 Query 60117 -TCACCACTATACTACCGAGGATTGAA 60142 | |||||||||||||| ||||||| Sbjct 1056071 TTGACCACTATACTACCAGAGATTGAA 1056045 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| ||| ||||||||||||| |||| |||||||||||||||| || | Sbjct 2304462 AAAAATTCTCTCC--GGCGGGGAATCGAACCCCGGTCGTCCGCGTGACAGGCGGAAATGC 2304405 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||| ||||| ||| Sbjct 2304404 TCACCACTATACCACCGAAGAT 2304383 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| ||| ||||||||||||| |||| |||||||||||||||| || | Sbjct 2304849 AAAAATTCTCTCC--GGCGGGGAATCGAACCCCGGTCGTCCGCGTGACAGGCGGAAATGC 2304792 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||| ||||| ||| Sbjct 2304791 TCACCACTATACCACCGAAGAT 2304770 >seq37 Length=1171872 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||||||||| | ||||| | | || || | || ||||||||||| Sbjct 188854 TCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAG 188795 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || || |||||||| | || | | ||| |||||| ||| || |||| | Sbjct 188794 ATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTT 188735 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | || || || | |||||||||||||| || || |||||||| Sbjct 188734 TCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACG 188675 Query 43173 AAGATTTGCATT 43184 || ||||||||| Sbjct 188674 AATATTTGCATT 188663 >seq47 Length=978588 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | ||||| ||| |||||| |||||| |||| |||||||||||||||| ||||| Sbjct 741695 AAAAATCTCTCC--GGCGGGGAATTGAACCCCGGTCGTCCGCGTGACAGGCGGAAATACT 741638 Query 60118 CACCACTATACTACCGAGGA--TTGAATATA 60146 |||||| ||||||||| || | ||||||| Sbjct 741637 -ACCACTGTACTACCGAAGACTTGGAATATA 741608 >seq3 Length=2579145 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/82 (84%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| ||| |||||| |||||| |||| |||||||||||||||| |||| Sbjct 234869 AAAAAATCTCTCC--GGCGGGGAATTGAACCCCGGTCGTCCGCGTGACAGGCGGAAATAC 234812 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||| ||||||||| ||| Sbjct 234811 T-ACCACTGTACTACCGAAGAT 234791 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/87 (84%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| ||| |||||| |||||| |||| |||||||||||||||| |||| Sbjct 235632 AAAAAATCTCTCC--GGCGGGGAATTGAACCCCGGTCGTCCGCGTGACAGGCGGAAATAC 235575 Query 60117 TCACCACTATACTACCGAGGA-TTGAA 60142 | |||||| ||||||||| || ||||| Sbjct 235574 T-ACCACTGTACTACCGAAGACTTGAA 235549 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| ||| |||||| |||||| |||| |||||||||||||||| |||| Sbjct 235254 AAAAAATCTCTCC--GGCGGGGAATTGAACCCCGGTCGTCCGCGTGACAGGCGGAAATAC 235197 Query 60117 TCACCACTATACTACCGAGGA-TTGA 60141 | |||||| ||||||||| || |||| Sbjct 235196 T-ACCACTGTACTACCGAAGACTTGA 235172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810152075760