Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq37 114 2e-20 seq17 95.1 2e-14 >seq37 Length=1171872 Score = 114 bits (126), Expect = 2e-20 Identities = 111/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | || ||||| || | ||||||||| ||| || ||||| |||||| Sbjct 188892 TTCCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAATCT 188834 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||||||||| | ||| || |||||||| ||||| || || | | |||||| || ||| Sbjct 188833 GAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGA 188774 Query 146168 GGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| || || Sbjct 188773 GGAATTCCCTCTTTGTCCTG 188754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || || | | |||||||| | ||| || ||||| ||||| || || | Sbjct 189348 TTCCACCCCTGAGACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCG 189289 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| || |||||||| ||||| || ||||| | ||||| || || | Sbjct 189288 AAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTG 189229 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| || || Sbjct 189228 GAATGCCTTCTTTGTCCTG 189210 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | || ||||| || | ||| ||||| ||| || || || |||||| Sbjct 188664 TTCCACCACGAAGACGTAGAACCAAGTGAAGAGTCGATTCCTTTTGA-ATGTTGTAATCT 188606 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||||||||||| ||| || | || || ||||| || || | | |||||| || ||| Sbjct 188605 GAAAGAGTTCTGCCATCCTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGA 188546 Query 146168 GGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| || || Sbjct 188545 GGAATTCCCTCTTTGTCCTG 188526 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 || |||||||| ||||| ||||| ||||||||||| | ||| || |||||||| || Sbjct 189088 GTGGATTCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCG 189029 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||| | || ||||| || || || |||||||||||||| Sbjct 189028 GCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTG 188982 >seq17 Length=1605837 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | |||||||| | ||||| || || ||||||||||| ||| Sbjct 84221 CCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAA 84280 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | || || | ||||||||||| || |||||||| ||||| || || ||| Sbjct 84281 AGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGA 84340 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| || || || || |||||| ||| || || Sbjct 84341 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACC 84400 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 ||||| ||||| || || || || | |||||| | |||||| |||||||| Sbjct 84401 TCTAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCATTTT 84450 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | |||||||| | ||||| || || ||||| ||||| ||| Sbjct 83765 CCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAA 83824 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | || || | ||||||||||| ||||||||||| ||||| || || ||| Sbjct 83825 AGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGA 83884 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || || || || Sbjct 83885 ATTCCCTCCTTGTCCTG 83901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743516715568640