Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq47 102 8e-17 >seq47 Length=978588 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || |||||||| ||||| || || |||||||| | ||| ||||| || || || |||| Sbjct 561852 AACGTAAGACCAGGCATGAGCCCACGTTTTTTCAGCCAGAATATCGCAGCGAAACTACCA 561793 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 |||||||| || |||||||| || ||||| |||| || || ||| || | ||| | | Sbjct 561792 GAAAAGAAAATCCCTTCAACAGCAGCAAAGGCAATCACTCTTTCAGCGAAGGTT-GCTGT 561734 Query 16406 ttactttct-atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 | ||| | ||||| || |||||| || ||||||| | || ||| | ||||| Sbjct 561733 CTCGTTTGTGATCCAGTTGAGAGCCCAGTTGGCTTTTTTTGCTACGCAGGGGAGATTCTC 561674 Query 16465 TATTGCATTAAATAAATA 16482 ||||| || || ||||| Sbjct 561673 AATTGCGTTGAACAAATA 561656 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 ||||||| | |||||||||||| | ||| |||| || |||||||| || |||||||| Sbjct 564591 CATAACTCCCCATTTTTGATATTCGCCGACTTTCTTCTCGAAGAAATTAGTCTTTCCTTC 564532 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGA 16029 || ||||| | ||||||||| || || ||||||| ||| Sbjct 564531 TAGCGAAATTTGTTCCATAAAGTCGAATGGATTTTCTGA 564493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462505975781200