Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq17 114 1e-20 seq425 105 5e-18 seq37 84.2 2e-11 >seq17 Length=1605837 Score = 114 bits (126), Expect = 1e-20 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| || || || || || ||| |||| ||| Sbjct 84239 ACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGTCCGTCCTCC 84298 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| ||||| ||||| | ||| ||||| || || | |||||||||||| Sbjct 84299 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84358 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | ||| | |||| ||||| | ||| || |||||| Sbjct 84359 ATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACCTCTAGGGTGATGGTCTTG 84418 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTCAATACACA 45352 |||||||| || ||||| || || ||||| || ||| || ||||| Sbjct 84419 CCCGTCAGTGTTTTCACGAATATCTGCATTTTTCCTGAA-ACACA 84462 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || ||||| || ||| |||||||| |||||||| || ||| ||| |||| ||| Sbjct 82970 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCC 83029 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| ||||| ||||| | ||| ||||| || || | |||||||||||| Sbjct 83030 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 83089 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | |||| ||||| | ||| || || || Sbjct 83090 ATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTC 83149 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| || ||||| |||||| Sbjct 83150 CCTGTGAGAGTCTTGACGAAGATCTGCATG 83179 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || ||||| || ||| |||||||| |||||||| || ||| ||| |||| ||| Sbjct 83327 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCC 83386 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| ||||| ||||| | ||| ||||| || || | |||||||||||| Sbjct 83387 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 83446 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | |||| ||||| | ||| || || || Sbjct 83447 ATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTC 83506 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| || ||||| |||||| Sbjct 83507 CCTGTGAGAGTCTTGACGAAGATCTGCATG 83536 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| || ||||| || || ||| |||| ||| Sbjct 83783 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83842 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| ||||| ||||| | ||| ||||| || || | |||||||||||| Sbjct 83843 AGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 83902 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| |||| ||||| | |||||| || || Sbjct 83903 ATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 83962 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| || ||||| |||||| Sbjct 83963 CCTGTGAGAGTCTTGACGAAGATCTGCATG 83992 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| |||||||| || ||| |||| | || ||| Sbjct 84011 ACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGACCATCTTCC 84070 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| ||||| ||||| ||||| | ||| ||||| || || | |||||||||||| Sbjct 84071 AATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84130 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| |||| ||||| | |||||| || || Sbjct 84131 ATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 84190 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || ||||| |||||| Sbjct 84191 CCTGTGAGGGTCTTGACGAAGATCTGCATG 84220 >seq425 Length=33725 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||||| | ||||||||| || || ||||||||||||||||| || Sbjct 29695 CCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAG 29754 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || || || ||||| |||| || ||||||||| || || Sbjct 29755 AGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 29814 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||||| || || | | |||| | |||| ||| Sbjct 29815 ATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACC 29874 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || | ||| || || || ||||| || || || |||||||| ||||||||| Sbjct 29875 TCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCATGTTG 29925 >seq37 Length=1171872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||| ||||| ||||| || || | | || ||| Sbjct 188872 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCC 188813 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| || ||||| || | || || ||||| ||||| | ||||| |||||| Sbjct 188812 AATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGG 188753 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | |||| ||||||| ||| || || ||| Sbjct 188752 ATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTG 188693 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| || || |||||||| Sbjct 188692 CCAGTCAGAGTCTTTACGAATATTTGCAT 188664 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || |||| |||||| ||||| || ||||| |||||||| || || || | ||| || || Sbjct 189046 TCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTA 188987 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || ||| || ||||| | | | |||| |||| ||||||| ||||| Sbjct 188986 TCTTGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATG 188927 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||||||||| || || |||||||| Sbjct 188926 GTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070182791882