Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq37 113 3e-20 seq425 91.5 1e-13 >seq37 Length=1171872 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 |||| || | || | ||| |||| |||||| || ||||||||||||||||||||||| | Sbjct 189576 ATCCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTG 189517 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 | ||| | | ||| |||| |||||| || || |||| | | ||| ||||| | Sbjct 189516 AGAGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAG 189457 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | ||| |||||||| || | |||||| | | ||| ||| ||| || ||| Sbjct 189456 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTA 189397 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||||| | || || |||| || || |||||||| |||||| Sbjct 189396 CTTCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCATT 189347 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| || ||||| |||||||| ||||| || | Sbjct 188891 TCCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGA 188832 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||| ||||||||||| || || ||||||| | ||| || || || Sbjct 188831 AAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGG 188772 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || || | |||||| | | ||| |||||| | |||| Sbjct 188771 AATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGAC 188712 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| ||||||| |||| || ||||| || ||||||||| Sbjct 188711 CTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || || | ||| || || |||||||||||||| ||||| |||| Sbjct 189118 CCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCGGAA 189059 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| ||||||||||| || ||| |||| | | |||||||| || Sbjct 189058 AGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 188999 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||| | | || || || | | | | |||||| | ||| Sbjct 188998 ATACCTTCTTTATCTTGAATCT-TAGCTTTAACATTTTCGATGGTGTCAGATGCCTCAAC 188940 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| ||||||| |||| || ||||| || ||||||||| Sbjct 188939 CTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188891 >seq425 Length=33725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| ||| ||||||| ||||||||||||||| || ||||||||||| || | Sbjct 29695 CCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAG 29754 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | || || || || |||| || || ||||| || ||| Sbjct 29755 AGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 29814 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || |||| | || ||||| | | | | ||||| | ||| Sbjct 29815 ATTCCCTCCTTGTCCTGGATTT-TGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTAC 29873 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 || | ||||||| |||| || || | ||||| ||||| || ||||| || ||||| Sbjct 29874 CTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCATGTTGAAACT 29930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379339182568290