Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq113 217 1e-51 seq109 134 1e-26 seq47 87.8 2e-12 >seq113 Length=346302 Score = 217 bits (240), Expect = 1e-51 Identities = 962/1508 (64%), Gaps = 34/1508 (2%) Strand=Plus/Plus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || || ||||| || || || || || ||||| | ||| | || | || || ||||| Sbjct 256620 AGATGGGGATTGACTACTTGGAATTCACCAGACAGTACACGCCTCGCGTAGATGTTGCTG 256679 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || || ||||||| ||| || |||| | ||||| | ||| || || || |||||| Sbjct 256680 GTGTAAGGCTCAATGGCCTCGTTGTTACCCAGAATTTGGGCTGTTGAGGCTGTTGGCATT 256739 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 ||||| | ||| || || || | || ||| || ||| | | || |||||| | Sbjct 256740 GGTGCCAGTAGGAGAGAGTTCCTAATACCGTGTTTAGATATTTTATCCTTGAGTTCAGCC 256799 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAA--CCACATATCATATTGTAGAATACCTTTAC 37360 || ||||| | || |||||| | || | |||||| ||||| || || || || | | Sbjct 256800 CAGTCCCAGAGATTTGTTGG--TGTTACACCCCACATGTCATACTGGAGGATGCCCTGGC 256857 Query 37361 TCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAG 37420 | |||| || | || || ||||| || | || | | || || ||||| | Sbjct 256858 TGACTGGTGAGCCTTTGTACGTCTCGTAGGTGCCCTTCTCCTGGGCGAGCTCGCATGAGG 256917 Query 37421 ATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTT 37480 || || || ||||||| | || ||||| || || ||||| | | | | || || | Sbjct 256918 CCTCGAGGGCACCATAATACAGGGTCTCGAAGATCTGGATATTGAGTTTCTGGGCCTCAT 256977 Query 37481 CGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATAC 37540 ||| ||||||| ||| | || | || ||| |||| |||| ||||||||| || || | Sbjct 256978 TGCTGTCGAATGGATAACGCATCAGTAGAAATGCATCTGCCAGACCCTGAACTCCAATTC 257037 Query 37541 CTATGGGTCTATGTTTCTTATTAGA---TCTAGACGATTCTATCACTGGATAATAATTGA 37597 | ||||| | |||| || | || || ||| | | || || ||| |||||||||| Sbjct 257038 CCATGGGACGATGTCTCATGTTGGAGACTCTTGCCTCCTCGAT---TGGGTAATAATTGA 257094 Query 37598 TATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGA 37657 ||| || | | | | |||||| | | | ||||| | | | ||| ||||| | Sbjct 257095 CATCGATAACTCTGTCGAGATTTCTTGCGACGATTTTGACGACTGTCTTCAGCTTGTTAA 257154 Query 37658 ACAT-AAATACGTTATTATT---------AACAAATTTACTCAACGAAATAGATCCTAGA 37707 | | || | || | | | |||| || ||| | ||| || | | | Sbjct 257155 AGTTGTAAGTCTTTTTCACTGGGTCCACGAACATGTTGACT----GCAATCGAGGCCAAA 257210 Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 || || |||||||||||||| | | | | | ||||| ||||| | || || Sbjct 257211 TTGCAAACAGCAACTTCATCGGGGCTCGAGTACTCGACGATCTCAGTACACAAGTTGCTG 257270 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 || | || |||||||| || | |||||||||||| |||| || | || || || || Sbjct 257271 CATTTTATCGTTCCCAAGTTCTTCTGATTGGATTTTCTATTGCATGCGTCCTTGTACAGC 257330 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCT 37887 || || || ||||| || | ||| | | | ||| | |||| | | ||| Sbjct 257331 ATGTAGGGAGTTCCAGTCTCGACTTGTGACATAAGAATTGCAGTCCAGAGCTCACGAGCT 257390 Query 37888 TTAAC--GATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAAT 37945 || || || ||||| || || | ||||| | | | || | || | || | Sbjct 257391 TTCACCTGA-CGCTTGAA-ACGGGCCTCTCCCTCGTACTGTGTGTAGAGCTTCTCGAATT 257448 Query 37946 CATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTT 38005 | | ||||| || |||| |||||||||||| || ||||| ||| ||| | | Sbjct 257449 CCTCACCCCAGGTGTCACATAGGCCTGGACATTCGTGGGGGCACATCAGACTCCACACAT 257508 Query 38006 CATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA-ATCT 38064 | || || |||| ||| |||||||| || | ||| | ||| ||||| || || Sbjct 257509 CGTCCGCCAGAACACGTTTCATGAATAAATCCGGGATCCAGAGTGC-GTAAAAAAGTTCA 257567 Query 38065 TTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATC 38123 | || |||||| || || ||| || |||||| || | |||| ||||||||| || Sbjct 257568 CGTGCTCGATATTCCTCTTTTCCTGTGTT-TTTCTTGAGATCGAGAACATCGAATATGTC 257626 Query 38124 AGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATT 38183 ||||||||| || || | |||||| | | |||||| || | ||| | || ||||||| Sbjct 257627 AGCGTGCCAGGGCTCGAGATAAATGGCAAATGCTCCAGGACGTTTGTTTCCACCCTGATC 257686 Query 38184 AATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCC 38243 || ||| | |||||||||| || | | | ||| ||||| | ||||| ||| | || Sbjct 257687 AACATAACGTGCTGTGTTATTGTAAACACGAAGCATGGGTACAAGCCCATTGGATATACC 257746 Query 38244 GTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCC 38303 || |||| | || || ||||| |||| ||| || || ||| ||||| Sbjct 257747 ATTGGTACCAGCAATTCGTGTCCCCTTGGCTCTGATACAGTGTACATTCACTCCAATTCC 257806 Query 38304 ACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATAC 38362 ||| || || |||| | || | || || || | || || | || || | || | Sbjct 257807 ACCAGC-TGATTTGCTGATGAGTGCACACCTCTTGAGGGTGTCGTAGATGCCATTAATGC 257865 Query 38363 TGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGT 38422 |||| || | |||| || | |||||| || ||||| || | ||| | ||| Sbjct 257866 TGTCGTCAGTCATTGTCAGGAGAAAACAGCTGGACATCTGTTGTCTACCAGTGCAGGCTG 257925 Query 38423 TAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTA 38482 || | || || ||||| || |||| || | || |||| ||| || ||||| || | Sbjct 257926 AGAAAAGGGTTGGTGATGCGTGAGTGAAGTATCTCTCGGACAGATAGTTGTATGTCTCAA 257985 Query 38483 TTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTG 38542 | || || || || | |||| || || | || || ||||| ||||| || | Sbjct 257986 TGACCCTGTCGATGTCCTCTTCGTGTATTCCCACAGCCACTCTCATCAGCATGTGGGCAG 258045 Query 38543 GTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTC 38602 | || || || |||| ||| || || ||||| | | || | || || | || Sbjct 258046 GCCTCTCAGCTACTTTACCATTGATCTTCAGCAGATAACTTCTCTCGAGGGTCTTGAATC 258105 Query 38603 CAAAATAA 38610 |||||||| Sbjct 258106 CAAAATAA 258113 >seq109 Length=386716 Score = 134 bits (148), Expect = 1e-26 Identities = 287/427 (67%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || || ||||| || ||||| || || ||||| ||||| | ||| | || |||||||| Sbjct 266201 AGATGGGGATTGACCACCTGGAATTCACCAGACAATACACGTCTCGAGTAGATATTGCTG 266142 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || || || |||| ||| || || | | ||||| | ||| || || || |||||| Sbjct 266141 GTGTAGGGCTCGATGGCCTCGTTGTTCCCAAGAATTTGGGCTGTTGAGGCTGTTGGCATT 266082 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 ||||| | ||| || || || | || ||| | |||| | | || |||| | | Sbjct 266081 GGTGCCAGTAGGAGAGAGTTCCTGATACCGTGTTTGGAAATTTTATCCTTGAGTTTAGCC 266022 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAA--CCACATATCATATTGTAGAATACCTTTAC 37360 || ||||| | || |||||| | || | |||||| || || || || || || | | Sbjct 266021 CAGTCCCAGAGATTTGTTGG--TGTTACACCCCACATGTCGTACTGGAGGATGCCCTGGC 265964 Query 37361 TCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAG 37420 | |||| || | || || ||||| || | || | | || || ||||| | Sbjct 265963 TGACTGGTGAGCCTTTGTACGTCTCGTAGGTGCCCTTCTCCTGGGCGAGCTCGCATGAGG 265904 Query 37421 ATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTT 37480 || ||||| | ||||| | || ||||| || || ||||| | | | | || || | Sbjct 265903 CCTCGAGTGCACCGTAATACAGGGTCTCGAAGATCTGGATATTGAGTTTCTGGGCGTCAT 265844 Query 37481 CGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATAC 37540 |||| ||||||| ||| | || | || ||| |||| |||| ||||||||| || || | Sbjct 265843 CGCTGTCGAATGGATAACGCATCAGTAGAAATGCATCTGCCAGACCCTGAACTCCAATTC 265784 Query 37541 CTATGGG 37547 | ||||| Sbjct 265783 CCATGGG 265777 Score = 89.7 bits (98), Expect = 5e-13 Identities = 341/525 (65%), Gaps = 8/525 (2%) Strand=Plus/Minus Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATA 38075 || |||| ||| |||| |||||| | ||| | ||| ||| || | || | |||||| Sbjct 265301 ACTCGTTTCATGAATAGATCAGGAATCCAGAGTGC-GTAGAACAGCTCACGCGCTCTATA 265243 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCATG 38134 ||| || || ||| ||||| ||| || | |||| ||| || || ||||||||||| | Sbjct 265242 TTCCTCCTTTCCTGTGTTCTT-CTTGAGATCGAGAACATCAAAGATGTCAGCGTGCCAGG 265184 Query 38135 GTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAA 38194 | || | |||||| | | ||| || || | ||| | || ||||||| || || | Sbjct 265183 GCTCGAGATAAATGGCAAATGCGCCAGGACGTTTGTTTCCACCCTGATCAACGTAACGTG 265124 Query 38195 CTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGG 38254 |||||||||| || | | | ||| ||||| | ||||| ||| || || |||| | Sbjct 265123 CTGTGTTATTGTAAACACGAAGCATGGGTACAAGCCCATTGGATACACCATTGGTACCAG 265064 Query 38255 ATATATAAGTACCCTTAGCTCGTATATTACTTATC-GACAATCCTATTCCACCTGCATGT 38313 || || ||||| |||| ||| | | | | || ||| || ||||| || || Sbjct 265063 CAATTCGTGTCCCCTTGGCTCTGATA-CAGTGAACATTCACTCCAATACCACCAGC-TGA 265006 Query 38314 TTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372 ||| | | | || || || | || || | || || || || ||||| || | Sbjct 265005 CTTGCTGACAAGTGCACACCTCTTGAGGGTGTCGTAGATGCCATCGATGCTGTCCTCAGT 264946 Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGT 38432 |||| ||| | ||||| || ||||| || | | ||| | ||| || | || Sbjct 264945 CATTGTTAGAAGGAAACAGCTGGACATCTGTTGTATACAAGTGCAGGCTGAGAAGAGGGT 264886 Query 38433 AGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATC 38492 || ||||| || |||| || | || |||| ||| || ||||| || || || | Sbjct 264885 TGGTGATGCGTGAGTGAAGTATCTCTCGGACAGATAGTTGTATGTCTCAATGACCCTGGC 264826 Query 38493 TATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATG 38537 ||||| | |||| || || | || || ||||| ||||| || Sbjct 264825 GATATCCTCCTCGTGTATTCCCACAGCCACTCTCATCAGCATGTG 264781 >seq47 Length=978588 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| ||| ||||||||| || || | || ||||| | || ||||||| Sbjct 561881 CTTCATCTCTGGATATGAGTTCATTACTGAACGTAAGACCAGGCATGAGCCCACGTTTTT 561822 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||| ||||| ||||| || |||||||||||| || || || ||||| ||||| | Sbjct 561821 TCAGCCAGAATATCGCAGCGAAACTACCAGAAAAGAAAATCCCTTCAACAGCAGCAAAGG 561762 Query 11772 CTACTACTCTTTC 11784 | | |||||||| Sbjct 561761 CAATCACTCTTTC 561749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||||| || ||||| ||||||||||| || | |||||| || |||||||||| ||| || Sbjct 561205 ATACATCTCCGAATGTATATTTTCCATTGCAACTTGAAACCCGTAGAAACATCTTGCTTC 561146 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 | || || || | |||| |||| ||| ||||||||| ||||| ||||| Sbjct 561145 AGTGACTTGGACTTCTTGACTGAATCGTTCCACTAGATTCTCATTCACAATTCCATC--- 561089 Query 12040 AGATGCA---AAAAATGCTAG 12057 |||||| ||||| ||||| Sbjct 561088 TGATGCAGCGAAAAACGCTAG 561068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468518697464480