Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq113 120 3e-22 seq109 114 1e-20 seq37 109 5e-19 seq425 98.7 1e-15 >seq113 Length=346302 Score = 120 bits (132), Expect = 3e-22 Identities = 294/442 (67%), Gaps = 8/442 (2%) Strand=Plus/Plus Query 153359 GGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGC 153418 ||| ||||| || ||| ||||| || ||| | ||||| | || ||| ||| | Sbjct 256916 GGCCTCGAGGGCACCATAATACAGGGTCTCGAAGATCTGGATATTGAGTTTCTGGGCCTC 256975 Query 153419 ATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAAT 153478 || ||| || | || |||| || | ||||||||| |||| ||| |||| ||||| Sbjct 256976 ATTGCTGTCGAATGGATAACGCATCAGTAGAAATGCATCTGCCAGACCCTGAACTCCAAT 257035 Query 153479 GCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCG 153538 || ||||||||||| | ||| || || | |||| | || | || || ||||| Sbjct 257036 TCCCATGGGACGATGTCTCATGTTGGAGACTCTTGCCTCCTCGATTGGGTAATAATTGAC 257095 Query 153539 GTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAA 153598 ||||||| | | | | | | | |||| ||| || || | | || | | ||| Sbjct 257096 ATCGATAACTCTGTCGAGATTTCTTGCGACGATTTTGACGACTGTCTTCAGCTTGTTAAA 257155 Query 153599 ATCAAACGTTCCATTAA-TG-----ATATATTTGTTGACGGCAATCGACGCCAAGTTGCA 153652 | | || || | || | | ||||||| |||||||| ||||| ||||| Sbjct 257156 GTTGTAAGTCTTTTTCACTGGGTCCACGAACATGTTGACTGCAATCGAGGCCAAATTGCA 257215 Query 153653 AACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTT 153712 ||| ||| ||| |||||| | || | || || || | |||||| ||||||||||| Sbjct 257216 AACAGCAACTTCATCGGGGCTCGAGTACTCGACGATCTCAGTACACAAGTTGCTGCATTT 257275 Query 153713 TATCAGGCCGCAATTACTT-TGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGT 153771 |||| | | ||| | ||| |||||| ||| | || || ||||||||||| ||||||| Sbjct 257276 TATC-GTTCCCAAGTTCTTCTGATTGGATTTTCTATTGCATGCGTCCTTGTACAGCATGT 257334 Query 153772 ATGGTGTGCCGGTTTCGGCTTG 153793 | || || || || ||| |||| Sbjct 257335 AGGGAGTTCCAGTCTCGACTTG 257356 >seq109 Length=386716 Score = 114 bits (126), Expect = 1e-20 Identities = 129/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 |||| || |||||||| ||||| |||||||| ||| |||| |||||| | || | | Sbjct 265633 TGTTAACTGCAATCGAGGCCAAATTGCAAACAGCAATTTCATCGGGGCTCGAGTACTCCA 265574 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTT-TGATTGCTTTTG 153743 | || || | ||||| ||||||||||||||| | | ||| | ||| |||||| ||| Sbjct 265573 CGATCTCAGTGCACAAGTTGCTGCATTTTATC-GTTCCCAAGTTCTTCTGATTGGATTTC 265515 Query 153744 CGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTG 153793 ||||| || ||||| ||||| |||||||| || || || || ||| |||| Sbjct 265514 CGGTTGCATGCGTCTTTGTACAGCATGTAGGGGGTCCCAGTCTCGACTTG 265465 >seq37 Length=1171872 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | ||| | ||| | || || ||||||||||| || |||||| Sbjct 189119 GCCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCGGA 189060 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || || || | |||||||| ||| |||||| ||| || ||||| || || Sbjct 189059 AAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGTGG 189000 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || |||||||| || ||| | || | |||| | | ||| | ||||| | | ||| | Sbjct 188999 GATACCTTCTTTATCT-TGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCAA 188941 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | || ||||| |||| || ||||||||||||||||| Sbjct 188940 CCTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188892 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||||| || |||||||| || ||||| Sbjct 188890 CCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAA 188831 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || | ||||||||||| |||| ||||||||||| || ||||| Sbjct 188830 AGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGA 188771 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| || || | | ||| | ||||| | | ||| ||| Sbjct 188770 ATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACC 188711 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || ||||| |||| || ||||||||||||||||| Sbjct 188710 TCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| || || |||||||||||||| || || Sbjct 189574 CCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAG 189515 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || || ||||||||||| |||||| |||||||||||| ||||| Sbjct 189514 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 189455 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || ||| || || | | ||| | || || | || ||| || Sbjct 189454 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACT 189395 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || |||| || || || || || ||||| Sbjct 189394 TCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCAT 189348 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678 ||||||||||| |||||| ||| ||||| || || || |||||||||||||| || Sbjct 189265 TGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGTATC 189206 Query 139679 TTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 || ||| | | ||| | |||||| | || || || || | ||| | |||||| || Sbjct 189205 TTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGATCGTCTTTCCT 189146 Query 139739 GTCAACGTTTTTACGAATATTTGCAT 139764 || | || ||||||||||| ||||| Sbjct 189145 GTAAGTGTCTTTACGAATATCTGCAT 189120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || || || ||||||||||| ||||| Sbjct 188662 CCACCACGAAGACGTAGAACCAAGTGAAGAGTCGATTCCTTTTGAATGTTGTAATCTGAA 188603 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || ||||| |||||||| |||| ||||||||||| || ||||| Sbjct 188602 AGAGTTCTGCCATCCTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGA 188543 Query 139658 ATGCCTTCTTTGTC 139671 || || |||||||| Sbjct 188542 ATTCCCTCTTTGTC 188529 >seq425 Length=33725 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||| | || || ||||||| || || || || |||||||| ||||| Sbjct 29695 CCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAG 29754 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | ||||||||||| |||||||| ||||||| | || || || || || Sbjct 29755 AGAGTGCGTCCA-TCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGG 29813 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| ||| | | ||| | |||||||| | ||| || Sbjct 29814 AATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTAC 29873 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || || || || | ||||| || || || ||||| Sbjct 29874 CTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCAT 29921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057538766400