Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq37 104 2e-17 seq7 82.4 6e-11 >seq37 Length=1171872 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| | || | | | || ||||||||||| |||||||| Sbjct 189082 TCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAG 189023 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| ||||||||||| | || | ||||||||| || ||| |||| || | Sbjct 189022 ATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCTTTAACATTT 188963 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| ||||| || || | || || ||||| || || ||||| || || Sbjct 188962 TCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACG 188903 Query 43099 AAAATTTGCATT 43110 || ||||||||| Sbjct 188902 AATATTTGCATT 188891 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| |||||||| | ||||||||| || Sbjct 188890 CCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAA 188831 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||||||||| || || || || | || || || || | || Sbjct 188830 AGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGA 188771 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || |||| | ||||| | ||| ||||| ||||||||| Sbjct 188770 ATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACC 188711 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || ||||| || || || ||||||||| Sbjct 188710 TCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188663 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| |||| ||| || || | |||||| || || | || | | | || ||| Sbjct 189328 ACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAAAGAGTTCTTCCATCCTCC 189269 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || || ||||| ||||| || || | || | |||||||| || ||| Sbjct 189268 AATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCTTTGTC-CTG 189210 Query 43021 -ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| ||||||| | ||| |||||| || || || || | || || || || Sbjct 189209 TATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGATCGTCTT 189150 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| || || || || || || || ||||| Sbjct 189149 TCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 >seq7 Length=2059422 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42920 CCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAA 42979 ||||||| | |||||||| || | ||||| | || || | |||||| || || |||| Sbjct 739752 CCTTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAA 739811 Query 42980 TCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTG 43038 ||||||||||||| || | || | || ||||| || ||| ||| ||||||| | Sbjct 739812 TCAATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATC-CTGAATCTTGGCTTTGACATTT 739870 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || || || ||| || || | || ||||| ||||| || | ||| || || Sbjct 739871 TCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACG 739930 Query 43099 AAAATTTGCATT 43110 ||||| |||||| Sbjct 739931 AAAATCTGCATT 739942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381364756844436