Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq113 113 5e-20 seq37 105 7e-18 seq109 102 8e-17 >seq113 Length=346302 Score = 113 bits (124), Expect = 5e-20 Identities = 297/444 (67%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 156781 GGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGC 156840 ||||||||| ||| ||| ||||| || || || || |||| | | ||| | Sbjct 256916 GGCCTCGAGGGCACCATAATACAGGGTCTCGAAGATCTGGATATTGAGTTTCTGGGCCTC 256975 Query 156841 ATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAAT 156900 || ||| || | || |||| || | ||||||||| |||| ||| |||| ||||| Sbjct 256976 ATTGCTGTCGAATGGATAACGCATCAGTAGAAATGCATCTGCCAGACCCTGAACTCCAAT 257035 Query 156901 GCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCG 156960 || ||||||||||| | ||| || || | |||| || || ||||| ||||| Sbjct 257036 TCCCATGGGACGATGTCTCATGTTGGAGACTCTTGCCTCCTCGATTGGGTAATAATTGAC 257095 Query 156961 ATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAA-TAGTTGAA 157019 ||| |||| | | | | | | | || |||||| || || | || | ||| || Sbjct 257096 ATCGATAACTCTGTCGAGATTTCTTGCGACGATTTTGACGACTGTCTTCAGCTTGTT-AA 257154 Query 157020 AATCAAAAGTATCATT-ATTG-----ATATATTTATTGACGGCAATCGACGCTAGATTAC 157073 | | |||| | || | || | | | ||||| |||||||| || | ||| | Sbjct 257155 AGTTGTAAGTCTTTTTCACTGGGTCCACGAACATGTTGACTGCAATCGAGGCCAAATTGC 257214 Query 157074 ATACGGCAGTTTCGTCGGGCGCGCAA-TATTGTACTATTTCCGCACACAAATTGCTGCAT 157132 | || ||| ||| ||||| || | | || | || || || | |||||| ||||||||| Sbjct 257215 AAACAGCAACTTCATCGGG-GCTCGAGTACTCGACGATCTCAGTACACAAGTTGCTGCAT 257273 Query 157133 TTTATCAATCCGCAATTACTT-TGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACAT 157191 |||||| ||| ||| | ||| |||||| ||| | ||||| ||||||||||| | ||| Sbjct 257274 TTTATCGTTCC-CAAGTTCTTCTGATTGGATTTTCTATTGCATGCGTCCTTGTACAGCAT 257332 Query 157192 GTACGGTGTGCCGGTTTCGGCTTG 157215 ||| || || || || ||| |||| Sbjct 257333 GTAGGGAGTTCCAGTCTCGACTTG 257356 >seq37 Length=1171872 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | ||| | ||| | || | || ||||||||||| || ||||||||| Sbjct 189119 GCCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCGGA 189060 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || || || | ||||||||| ||| |||||| ||| || ||||| || || Sbjct 189059 AAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGTGG 189000 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || ||| || ||| | | ||| | ||||| | | || || Sbjct 188999 GATACCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCAAC 188940 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| |||| || ||||||||||||||||| Sbjct 188939 CTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188892 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||| | ||| ||||| | || || ||||| || || ||||| || | || || Sbjct 189335 ACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAAAGAGTTCTTCC 189276 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || | |||||||||||| |||||| ||| ||||| || || || ||||||||||| Sbjct 189275 ATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCTTT 189216 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || ||| | | ||| | ||||| | || ||| ||||| | || | Sbjct 189215 GTCCTGTATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGAT 189156 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || || | ||| ||||||||||| ||||| Sbjct 189155 CGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | ||| || |||| || ||||||||||| |||||||| || Sbjct 189574 CCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAG 189515 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || |||||||||||||| |||||| |||||||||||| ||||| Sbjct 189514 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 189455 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || || || || | | ||| | || || | || |||||| Sbjct 189454 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACT 189395 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || |||| || || || || || ||||| Sbjct 189394 TCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCAT 189348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| |||||||| ||||| || |||||||| Sbjct 188890 CCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAA 188831 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || | |||||||||||| |||| ||||||||||| || ||||| Sbjct 188830 AGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGA 188771 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| || || || | | ||| | ||||| | | || || Sbjct 188770 ATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACC 188711 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| |||| || ||||||||||||||||| Sbjct 188710 TCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188664 >seq109 Length=386716 Score = 102 bits (112), Expect = 8e-17 Identities = 127/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 157049 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAA-TATTGTAC 157107 || || |||||||| || | ||| || || ||| |||| ||||| || | | || | || Sbjct 265631 TTAACTGCAATCGAGGCCAAATTGCAAACAGCAATTTCATCGGG-GCTCGAGTACTCCAC 265573 Query 157108 TATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTT-TGATTGCTTTTGC 157166 || || | ||||| ||||||||||||||| ||| ||| | ||| |||||| ||| | Sbjct 265572 GATCTCAGTGCACAAGTTGCTGCATTTTATCGTTCC-CAAGTTCTTCTGATTGGATTTCC 265514 Query 157167 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 157215 ||||||| ||||| ||||| | |||||| || || || || ||| |||| Sbjct 265513 GGTTGCATGCGTCTTTGTACAGCATGTAGGGGGTCCCAGTCTCGACTTG 265465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507007796137440