Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq109 104 3e-17 seq1 102 1e-16 seq113 98.7 1e-15 >seq109 Length=386716 Score = 104 bits (114), Expect = 3e-17 Identities = 349/543 (64%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGG 96879 ||| ||| || || || ||||| | | |||||| | |||| |||||| |||| Sbjct 265082 CCAATGGGCTTGTACCCATGCTTCGTGTTTACAATAACACAGCACGTTACGTTGATCAGG 265141 Query 96880 GCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTT 96939 | || || ||||| || ||||| | ||| | || | || || |||||||| ||| | | Sbjct 265142 GTGGAAACAAACGTCCTGGCGCATTTGCCATTTATCTCGAGCCCTGGCACGCTGACATCT 265201 Query 96940 TTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGT 96999 |||| || |||| | || ||| | || || || |||| | || ||| Sbjct 265202 TTGATGTTCTCGATCTCAAGAAGAACACAGGAAAGGAGGAATATAGAGCGCGTGAGCTGT 265261 Query 97000 TTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGA 97059 | || ||||||||| | || ||| | |||||||| || ||| | | ||| |||| Sbjct 265262 TCTACGCACTCTGGATTCCTGATCTATTCATGAAACGAGTCCTGGCGGATGGTATGTGGA 265321 Query 97060 GCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAG- 97118 | || ||||||||| || || || || || | || | ||||| |||||||||||| Sbjct 265322 GTCTGATGTGCCCCCACGAGTGTCCAGGCCTTTGTGACTCTTGGGGTGAAGAGTTTGAGA 265381 Query 97119 ---GCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 | | ||| | |||||| | |||| || | | | | | || | || || Sbjct 265382 ATCTCTACGTAAA----ATACGAGAACGAGGCTCGTTTCAAGCGTCAGGTGAAGGCTCGT 265437 Query 97176 GAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTAC 97235 || || |||| || || | | | | || || |||||||| || || ||||| || ||| Sbjct 265438 GATCTCTGGACTGCAATTCTTATGTCACAAGTCGAGACTGGGACCCCCTACATGCTGTAC 265497 Query 97236 AAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAAT 97295 || || | || || || ||| || ||||||| || || || || ||| Sbjct 265498 AAAGACGCATGCAACCGGAAATCCAATCAGAAGAACTTGGGAACGATAAAATGCAGCAAC 265557 Query 97296 CTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCA 97355 ||||||| || || || |||||| | || || || | || |||||| | |||| Sbjct 265558 TTGTGCACTGAGATCGTGGAGTACTCGAGCCCCGATGAAATTGCTGTTTGCAATTTGGCC 265617 Query 97356 TCG 97358 ||| Sbjct 265618 TCG 265620 >seq1 Length=5503185 Score = 102 bits (112), Expect = 1e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 70202 GATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCA 70261 ||| | |||||| | || || |||||||||| || || | | | ||||||| || ||| Sbjct 1252132 GATCGCAGGATCATTATCTGTGCATGGAATCCAGCCGACATCCCCAAAATGGCTCTGCCA 1252191 Query 70262 CCGTGTCACTGTTTGGCTCAGTTTTACTCGTA--CGATGGCAAATTGTCATGCTTAATGT 70319 |||||||| || | | ||||| | ||||| | |||| | | || || | | Sbjct 1252192 CCGTGTCATTGCCTCGTGCAGTTCT--TCGTAGCCAATGGGGAGCTCTCCTGTCATCTCT 1252249 Query 70320 ATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGT 70379 |||| | ||||| |||||||||||||| || || || |||||||| ||| || ||| Sbjct 1252250 ATCAACGAAGTGCAGACATGGGCCTCGGAGTGCCTTTCAACATTGCCTCCTACTCATTGT 1252309 Query 70380 TGACGCACATGATTGCTCACAT 70401 ||||| ||||| | |||||||| Sbjct 1252310 TGACGTACATGCTGGCTCACAT 1252331 >seq113 Length=346302 Score = 98.7 bits (108), Expect = 1e-15 Identities = 329/507 (65%), Gaps = 14/507 (3%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGG 96879 ||| ||| || || || ||||| | | |||||| | |||| || ||| |||| Sbjct 257739 CCAATGGGCTTGTACCCATGCTTCGTGTTTACAATAACACAGCACGTTATGTTGATCAGG 257680 Query 96880 GCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTT 96939 | || || ||||| || || || | ||| | || | || || |||||||| ||| | | Sbjct 257679 GTGGAAACAAACGTCCTGGAGCATTTGCCATTTATCTCGAGCCCTGGCACGCTGACATAT 257620 Query 96940 TTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA---CGAGCCAGGGACT 96996 | || || |||| | |||||| | || |||||| | ||||| | || Sbjct 257619 TCGATGTTCTCGATCTCAAGAAAAACACAGGAA---AAGAGGAATATCGAGCACGTGAAC 257563 Query 96997 TGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC- 97055 | ||||| ||||||||| | || ||||| |||||||| || || | ||| | | Sbjct 257562 TTTTTTACGCACTCTGGATCCCGGATTTATTCATGAAACGTGTTCTGG-CGGACGATGTG 257504 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||||| || ||||||||| || | || || || | || |||||| || || || Sbjct 257503 TGGAGTCTGATGTGCCCCCACGAATGTCCAGGCCTATGTGACACCTGGGGTGAGGAATTC 257444 Query 97116 GAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCA 97172 ||| ||| ||||| |||||| ||||| ||| | | | | | || | || Sbjct 257443 GAG---AAGCTCTACACACAGTACGAGGGAGAGGCCCGTTTCAAGCGTCAGGTGAAAGCT 257387 Query 97173 CGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 || || || |||| || || | | | | || || |||||||||||||| ||||| || Sbjct 257386 CGTGAGCTCTGGACTGCAATTCTTATGTCACAAGTCGAGACTGGAACTCCCTACATGCTG 257327 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 |||||||| | ||| | || ||| || ||||||| || || || || | Sbjct 257326 TACAAGGACGCATGCAATAGAAAATCCAATCAGAAGAACTTGGGAACGATAAAATGCAGC 257267 Query 97293 AATCTGTGCACGGAAATTGTAGAGTAC 97319 || |||| || || || || |||||| Sbjct 257266 AACTTGTGTACTGAGATCGTCGAGTAC 257240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049547703920