Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq37 122 6e-23 seq425 100 2e-16 seq7 96.9 3e-15 seq17 93.3 3e-14 >seq37 Length=1171872 Score = 122 bits (134), Expect = 6e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| |||||||| || ||||||||| ||| |||| | || || |||||| Sbjct 189094 TGGAGGGTGGATTCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGT 189035 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || || || | |||||||| ||||| || ||| || |||||||| || ||| || Sbjct 189034 TTACCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTA 188975 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| |||| ||||| || || || || | ||||||||||| || || Sbjct 188974 GCT-TTAACATTTTCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTTGCCAGT 188916 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| || |||||||| Sbjct 188915 CAGAGTCTTTACGAATATTTGCAT 188892 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | ||| || |||||||| || |||||||| |||||||| || Sbjct 189574 CCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAG 189515 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | || || | |||||| |||||| | ||||||||||| || || || Sbjct 189514 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 189455 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || || ||| ||| ||| |||| || ||||| ||||| Sbjct 189454 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACT 189395 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || |||||||| || |||||||| ||||| Sbjct 189394 TCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCAT 189348 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || ||||| ||||| || || ||||| || ||| |||| | || || Sbjct 189329 AACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAAAGAGTTCTTCCATCCTC 189270 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| |||||| | |||||||| || ||||| |||||| ||||||||||| Sbjct 189269 CAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTG 189210 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || ||| |||| || || || ||| || || | ||| || || || Sbjct 189209 TATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGATCGTCTT 189150 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || || ||||| Sbjct 189149 TCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| || ||||| || || || ||||| ||||||||||| ||| |||| | || Sbjct 188648 TAGAACCAAGTGAAGAGTCGATTCCTTTTGAATGTTGTAATCTGAAAGAGTTCTGCCATC 188589 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 || | || || |||||| | || | |||||| ||||| |||||||| |||||||| Sbjct 188588 CTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTC 188529 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATC 15303 || ||| ||| ||| |||| |||||||| Sbjct 188528 CTGGATCTTGGCCTTGACATTTTCAATGGTATC 188496 >seq425 Length=33725 Score = 100 bits (110), Expect = 2e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| | || || ||||| || || || || || ||||||||||| Sbjct 29695 CCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAG 29754 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || || |||||| | |||| | |||||||| ||| Sbjct 29755 AGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 29814 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| |||||| || ||| |||| || || ||| | ||||| Sbjct 29815 ATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACC 29874 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || | ||| |||||||| || || || ||||| ||||| || ||||| |||||| Sbjct 29875 TCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCAT-GTTGAAA 29928 >seq7 Length=2059422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| ||||||||||| ||| | | | | || || | |||||| |||||| | ||| Sbjct 739754 TTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAATC 739813 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 || || |||||||| |||||||| ||||| || ||| ||| || ||| |||| Sbjct 739814 AATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTGACATTTTCG 739873 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355 |||||||| | || || || | ||| || || || || |||| ||| || || ||| Sbjct 739874 ATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACGAAA 739933 Query 15356 ATTTGCAT 15363 || ||||| Sbjct 739934 ATCTGCAT 739941 >seq17 Length=1605837 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || || || ||||||||||| || | | | ||||| Sbjct 84011 ACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGACCATCTTCC 84070 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || |||||| | ||||| | || ||||| |||||||| || ||||| Sbjct 84071 AATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84130 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| |||| ||||| || || || || | |||||||||||| Sbjct 84131 ATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 84190 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || || || ||||| Sbjct 84191 CCTGTGAGGGTCTTGACGAAGATCTGCAT 84219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| ||||| || || || ||||||||||| || | | |||| || Sbjct 82970 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCC 83029 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| |||||| | ||||| | || ||||| ||||| || || ||||| Sbjct 83030 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 83089 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || |||| ||||| || | || || || | ||| |||||||| Sbjct 83090 ATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTC 83149 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| || || || || ||||| Sbjct 83150 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83178 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| ||||| || || || ||||||||||| || | | |||| || Sbjct 83327 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCC 83386 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| |||||| | ||||| | || ||||| ||||| || || ||||| Sbjct 83387 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 83446 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || |||| ||||| || | || || || | ||| |||||||| Sbjct 83447 ATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTC 83506 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| || || || || ||||| Sbjct 83507 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83535 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || ||||||||||| ||| | | |||| || Sbjct 83555 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83614 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| |||||| | ||||| | || ||||| |||||||| |||||||| Sbjct 83615 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGG 83674 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| |||| ||||| || || || || | ||| |||||||| Sbjct 83675 ATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTGATGGTTTTC 83734 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || || || ||||| Sbjct 83735 CCTGTGAGGGTCTTGACGAAGATCTGCAT 83763 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || || || ||||| ||| | | |||| || Sbjct 84239 ACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGTCCGTCCTCC 84298 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| |||||| | ||||| | || ||||| |||||||| || ||||| Sbjct 84299 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84358 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || || ||||| | || || |||| ||| ||||| || Sbjct 84359 ATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACCTCTAGGGTGATGGTCTTG 84418 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| ||||| || || || ||||| ||| Sbjct 84419 CCCGTCAGTGTTTTCACGAATATCTGCATTTTT 84451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || || |||||||| ||| | | |||| || Sbjct 83783 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83842 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| |||||| | ||||| | || ||||| |||||||| || ||||| Sbjct 83843 AGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 83902 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || || || || || || || | |||||||||||| Sbjct 83903 ATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 83962 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| || || || || ||||| Sbjct 83963 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362174600550522