Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq37 159 8e-34 seq425 152 1e-31 seq7 149 1e-30 seq17 147 5e-30 seq112 143 6e-29 >seq37 Length=1171872 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | || |||||||| |||||||| || || Sbjct 189121 ATGCCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCG 189062 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || | |||||| || ||||| || | | ||||||||| || Sbjct 189061 GAAAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGT 189002 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| |||||||| ||||| |||||||| | ||| || | || Sbjct 189001 GGGATACCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCA 188942 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| |||||||| || || ||||| || || ||||| ||||| |||||| Sbjct 188941 ACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188891 Score = 156 bits (172), Expect = 1e-32 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || | ||| || | || | || |||||||| ||||| || ||||| || Sbjct 189575 TCCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGA 189516 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 |||||||| || || || |||||||| ||||| || || | | || ||||||||||| Sbjct 189515 GAGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGG 189456 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || || || |||||||| ||||| || || |||||||| | ||||| | ||||| Sbjct 189455 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTAC 189396 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || ||||| ||||| || || || ||||| ||||||||| Sbjct 189395 TTCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCATT 189347 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | ||| || | ||| | || || |||||||| ||||| ||||| Sbjct 189349 ATTCCACCCCTGAGACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCC 189290 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || | |||||| ||||| || || | | ||| || || || Sbjct 189289 GAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGT 189230 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| ||||| |||||||| | || || | ||| Sbjct 189229 GGAATGCCTTCTTTGTCCTGTATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCA 189170 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || |||||||| ||||| ||||||||||| Sbjct 189169 ACTTCGAGGGTGATCGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 >seq425 Length=33725 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || ||||| | || | ||| ||||| |||||||| || || ||||| ||||| | || Sbjct 29707 CTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCA 29766 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| || || || ||||| || || ||||||||||| || || || ||||| || || Sbjct 29767 TCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCCTCCTTG 29826 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||| || || ||||| |||||||| | || ||| || |||||||| || || || Sbjct 29827 TCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACCTCGAGGGTGATG 29886 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| ||||| |||||||| ||| Sbjct 29887 GTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCATGTTG 29925 >seq7 Length=2059422 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || || || ||||| ||||| | || || || |||||||| ||||| ||||| Sbjct 739754 TTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAATC 739813 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | |||||| || ||||| ||||| ||||||||||||||||| ||||| |||||||| Sbjct 739814 AATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTGACATTTTCG 739873 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | |||||| ||| || ||||| || || |||||||| || || | || || || || Sbjct 739874 ATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACGAAA 739933 Query 104552 ATCTGCATTTTG 104563 ||||||||| || Sbjct 739934 ATCTGCATTGTG 739945 >seq17 Length=1605837 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||||| || ||||| |||||||| ||||| ||||| | ||||| Sbjct 84235 AAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGTCCGTC 84294 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||||||||| || || | ||||| || || || || ||||| || || || Sbjct 84295 CTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 84354 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| || || || || || || || | ||||| || || |||||||| || || || Sbjct 84355 CTGGATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACCTCTAGGGTGATGGT 84414 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || || |||||||| || |||||||||||||| Sbjct 84415 CTTGCCCGTCAGTGTTTTCACGAATATCTGCATTTT 84450 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || || ||||| ||||| | ||||| || || ||||||||| Sbjct 83567 GTAGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCA 83626 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | ||||| || || || || ||||| ||||| ||||| || || || || Sbjct 83627 GCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCCTTG 83686 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || | || ||||| || || || || || || || || || Sbjct 83687 ACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTC 83746 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 83747 TTGACGAAGATCTGCAT 83763 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||||| || ||||| ||||| || ||||| ||||| | ||||| Sbjct 83779 AAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCGTC 83838 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||||||||| ||||| | ||||| || || || || ||||| || || || Sbjct 83839 CTCCAGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 83898 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| || || || || || || || | || || | || ||||| || ||||| || Sbjct 83899 CTGGATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGT 83958 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 83959 TTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || ||||| || || | ||||| || || ||||||||| Sbjct 82982 GTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCA 83041 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | ||||| || || || || || || || || ||||| || || || || Sbjct 83042 GCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTG 83101 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||| || || || ||||| || || || || || || || || || Sbjct 83102 ACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTC 83161 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 83162 TTGACGAAGATCTGCAT 83178 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || ||||| || || | ||||| || || ||||||||| Sbjct 83339 GTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCA 83398 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | ||||| || || || || || || || || ||||| || || || || Sbjct 83399 GCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTG 83458 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||| || || || ||||| || || || || || || || || || Sbjct 83459 ACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTC 83518 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 83519 TTGACGAAGATCTGCAT 83535 >seq112 Length=360945 Score = 143 bits (158), Expect = 6e-29 Identities = 299/442 (68%), Gaps = 4/442 (1%) Strand=Plus/Minus Query 238443 GATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAATCCACACATTCATGGGCA 238502 |||||||| || ||||| ||| | | || ||| || || || || | ||||| Sbjct 302421 GATAATTTCTGTTATTACAATGAGAATTACGATAAGATCGAGGGCAGTAATGCGTGGGCT 302362 Query 238503 CGAGAAACATTAGAAGCACACGTAAATGATAGAAGAAAATATATTTACTCTTTAAAACAG 238562 | |||| | || || ||| || |||| |||| | | |||||| | || || | Sbjct 302361 ATACAAACCCTGGACGCTCACAGGAAAGATAAAAGAGAGTGGATTTACACACTAGAAGAA 302302 Query 238563 CTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGA 238622 |||||| || | || ||||| ||| |||||| | ||||||| || |||| ||| Sbjct 302301 TTCGAGACTTCCCAGACCCACGAGGACCTCTGGAATGCAGCCCAGAATCAGTTGGTGAGA 302242 Query 238623 CTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACT 238682 || ||||| ||| | ||| | | ||||| ||||||||||| || || || |||| Sbjct 302241 GAGGGAAAAATTCATGGATTCATGAGGATGTACTGGGCTAAAAAAATTCTCGAGTGGAGC 302182 Query 238683 AGATCTCCAAAGGAAGCTCTTAGATATAGT--ATTTATCTGAACGATAAATACGAACTCG 238740 || | ||| |||| || || || | || || ||||| || || | ||| | | Sbjct 302181 CGAACACCAGAGGATGCCCT-AGCC-TGGTCAATCTATCTCAATGACAGGTACAGCATGG 302124 Query 238741 ACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATA 238800 | || | ||||| || || || || || |||||||||||||| |||||| | |||||| Sbjct 302123 ATGGAAGAGATCCCAATGGTTATGTTGGATGTATGTGGTCAATCTGTGGAATTCACGATC 302064 Query 238801 GGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTA 238860 | |||| ||| | |||||||||||| || | |||||||| || ||||| | Sbjct 302063 AAGGATGGAAAGAGCGTGAGATATTTGGAAAAATTCGTTACATGAACTACAAAGGATGTG 302004 Query 238861 AGAAAAAATTTGATGTAAATGC 238882 | | |||||| ||||| || || Sbjct 302003 AAAGAAAATTCGATGTGAAAGC 301982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151383028111736