Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq17 89.7 4e-13 seq425 82.4 6e-11 >seq17 Length=1605837 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 ||||| ||||| ||| ||||| || ||||||||||||| | | || |||||||| Sbjct 82970 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCC 83029 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || | || || | |||||| || || | | ||||||||| Sbjct 83030 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 83089 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | ||||| || | || ||| ||| | || |||||||| Sbjct 83090 ATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTC 83149 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || |||||||| Sbjct 83150 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83178 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 ||||| ||||| ||| ||||| || ||||||||||||| | | || |||||||| Sbjct 83327 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCC 83386 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || || || | || || | |||||| || || | | ||||||||| Sbjct 83387 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 83446 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | ||||| || | || ||| ||| | || |||||||| Sbjct 83447 ATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTC 83506 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || |||||||| Sbjct 83507 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || |||||||| || |||||| || || |||||||||| | | || || ||||||| Sbjct 83783 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTG-CGTCCGTCCTC 83841 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || || || |||| || | |||||| || || | | ||||||||| Sbjct 83842 CAGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 83901 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| ||||| | | || || || | | ||| ||| | || |||||||| Sbjct 83902 GATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTT 83961 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || |||||||| Sbjct 83962 CCCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 >seq425 Length=33725 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || || || | || || |||||||| ||||| |||||||||||||||| Sbjct 29694 ACCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGA 29753 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | || || ||||||||||| || | || | | ||| || || | Sbjct 29754 GAGAGTG-CGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGG 29812 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| ||||| |||| | | || || |||| || ||| Sbjct 29813 GAATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTA 29872 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || |||||||| || || || ||||| ||||| |||||||| Sbjct 29873 CCTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCAT 29921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421245850373042