Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq31 105 3e-18 seq108 102 4e-17 >seq31 Length=1285234 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||||||| |||| |||||||||| ||||||||||||||||||||| Sbjct 45175 AAGAAAAAA--AAATTGGCTTATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 45118 Query 11501 GACGCTCTRACCAACTGAGCTAAT 11524 |||||||| ||||||||||||||| Sbjct 45117 GACGCTCTAACCAACTGAGCTAAT 45094 >seq108 Length=373708 Score = 102 bits (112), Expect = 4e-17 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||||||| | ||| |||||||||| ||||||||||||||||||||||||| Sbjct 174184 AAAAAAAAAAATTGGTTCCTGAGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGAC 174243 Query 11504 GCTCTRACCAACTGAGCTAA 11523 ||||| |||| ||||||||| Sbjct 174244 GCTCTAACCAGCTGAGCTAA 174263 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||||||| | ||| |||||||||| ||||||||||||||||||||||||| Sbjct 173981 AAAAGAAAAAATTGGTTCCTGAGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGAC 174040 Query 11504 GCTCTRACCAACTGAGCTAA 11523 ||||| |||| ||||||||| Sbjct 174041 GCTCTAACCAGCTGAGCTAA 174060 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||||||| | || |||||||||| ||||||||||||||||||||||||| Sbjct 174633 AAAAAAAAAAATTGGTTCCTGGGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGAC 174692 Query 11504 GCTCTRACCAACTGAGCTAA 11523 ||||| |||| ||||||||| Sbjct 174693 GCTCTAACCAGCTGAGCTAA 174712 Lambda K H 0.639 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261487879225192