Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq17 136 4e-27 seq37 116 3e-21 seq425 98.7 9e-16 >seq17 Length=1605837 Score = 136 bits (150), Expect = 4e-27 Identities = 159/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 || ||||| | ||| |||||||| || | ||| ||||| | ||||| | |||| Sbjct 82970 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAG--AGAGTGTGCGTCCGTCCT 83027 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||||||||| | ||||| ||||| ||||| ||||| ||||| || || ||||| | Sbjct 83028 CCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCT 83087 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| ||||||||| ||| ||||| | ||||| |||| |||||||||| Sbjct 83088 GGATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTT 83147 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || ||||| || || ||||||||||||| Sbjct 83148 TCCCTGTGAGAGTCTTGACGAAGATCTGCATGC 83180 Score = 136 bits (150), Expect = 4e-27 Identities = 159/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 || ||||| | ||| |||||||| || | ||| ||||| | ||||| | |||| Sbjct 83327 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAG--AGAGTGTGCGTCCGTCCT 83384 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||||||||| | ||||| ||||| ||||| ||||| ||||| || || ||||| | Sbjct 83385 CCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCT 83444 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| ||||||||| ||| ||||| | ||||| |||| |||||||||| Sbjct 83445 GGATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTT 83504 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || ||||| || || ||||||||||||| Sbjct 83505 TCCCTGTGAGAGTCTTGACGAAGATCTGCATGC 83537 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | |||||||| | ||||| ||||| || | ||| ||||| Sbjct 83537 CCTCCACGAAGTCGAAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGAA 83596 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||||||||||||||||| | ||||| ||||| ||||| ||||| ||| Sbjct 83597 AGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGA 83656 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||||| |||||||| ||| ||||| | ||||| Sbjct 83657 ATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACC 83716 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| ||||||||||| || || || || || || ||||||||||||| Sbjct 83717 TCAAGGGTGATGGTTTTCCCTGTGAGGGTCTTGACGAAGATCTGCATGC 83765 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | ||||| || | ||||| ||||| || | || ||||| Sbjct 83765 CCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAA 83824 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||||||||||||||||| | || || ||||| ||||| ||||| ||| Sbjct 83825 AGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGA 83884 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| ||||||||| | | |||||| | ||||| Sbjct 83885 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACC 83944 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || |||||||| || || ||||| || || ||||||||||||| Sbjct 83945 TCAAGGGTAATGGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCATGC 83993 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | ||||| || | ||||| ||||| || | |||||||| Sbjct 84221 CCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAA 84280 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||||||||||||||||| | ||||| ||||| ||||| ||||| ||| Sbjct 84281 AGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGA 84340 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| ||||||||| | | ||| || | || || Sbjct 84341 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACC 84400 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || |||||||| || |||||||| Sbjct 84401 TCTAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCAT 84447 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | ||||| || | ||| || ||||| || | ||| ||||| Sbjct 83993 CCTCCACGAAGTCGAAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAG-- 84050 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || ||| |||| || ||||| | ||||| ||||| ||||| ||||| | Sbjct 84051 AGAGTGTGCGACCATCTTCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGG 84110 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || ||||| | ||||| |||||||| ||| ||||| | |||| Sbjct 84111 GAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGA 84170 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | |||| || |||||||| || || || || || || ||||||||||||| Sbjct 84171 CCTCAAGGGTAATGGTTTTCCCTGTGAGGGTCTTGACGAAGATCTGCATGC 84221 >seq37 Length=1171872 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||||||||| | || ||||| | ||| | ||||||| Sbjct 188872 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCC 188813 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | ||||| | | |||||| ||||||||||| || |||||||| | Sbjct 188812 AATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGG 188753 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| | | ||||||| ||||| || | ||||||||||| Sbjct 188752 ATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTG 188693 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || || || || ||||| Sbjct 188692 CCAGTCAGAGTCTTTACGAATATTTGCAT 188664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||| ||||| | || |||||| | ||| | |||||||| ||||| ||| Sbjct 189088 GTGGATTCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCG 189029 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || | || |||||||| || ||||||||||| || | ||| || || || Sbjct 189028 GCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCTTTA 188969 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| ||||||| || || || | || |||||||| ||||| ||||| Sbjct 188968 ACATTTTCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTC 188909 Query 94991 TTCACAAAGATCTGCAT 95007 || || || || ||||| Sbjct 188908 TTTACGAATATTTGCAT 188892 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| ||||||||||| | ||| ||||| | ||| || |||||| Sbjct 188644 ACCAAGTGAAGAGTCGATTCCTTTTGAATGTTGTAATCTGAAAGAGTTCTGCCATCCTCA 188585 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | |||||| ||||||||||| || |||||||| | Sbjct 188584 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGG 188525 Query 94919 ATTTTTGCCTTGAC 94932 || || |||||||| Sbjct 188524 ATCTTGGCCTTGAC 188511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| ||||| || | ||||| || | ||||| ||||| ||||| |||||||| Sbjct 189275 ATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCTTT 189216 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || || ||||| | | ||||||| | || || || | ||||| Sbjct 189215 GTCCTGTATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGAT 189156 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| ||||| || || || || |||||||||| Sbjct 189155 CGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCATGC 189118 >seq425 Length=33725 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 94790 AATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTG 94849 |||| || |||||||| | || |||||||| || | ||| ||||| | |||| Sbjct 29704 AATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGT 29763 Query 94850 GAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| || ||||| || || | ||||| | || || || ||||| ||||| || || Sbjct 29764 CCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCCTCC 29823 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | ||||| || ||||| ||| ||||| | || || || | ||| Sbjct 29824 TTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACCTCGAGGGTG 29883 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||||| || || || ||||| ||||||||||||||| Sbjct 29884 ATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCATG 29922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285361007120