Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 230 4e-56 seq183 86.0 1e-12 >seq4 Length=2563545 Score = 230 bits (254), Expect = 4e-56 Identities = 211/267 (79%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| ||||||||||| ||||||||||| ||||||||| Sbjct 1379682 GCCAAGCGCCATCGCAAAGTTCTTCGTGATAACATCCAGGGAATCACCAAACCAGCTATC 1379741 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || || ||| | ||||| ||| |||| ||||| | | Sbjct 1379742 CGTCGTCTCGCTCGCCGAGGTGGTGTGAAACGTATTTCTGGTTTGATCTACGAAGAAACT 1379801 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | ||| | ||||| ||| || |||| |||||| || ||||| || Sbjct 1379802 CGTGGTGTTCTCAAGGTATTCCTTGAGAATGTCATCCGTGATGCAGTCACATATACTGAA 1379861 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || |||||||| |||| ||||| ||||||||||||||| Sbjct 1379862 CACGCCAAAAGGAAGACAGTAACAGCCATGGATGTCGTTTATGCTTTGAAACGTCAAGGC 1379921 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || |||||| ||||| Sbjct 1379922 CGCACTCTTTACGGATTTGGAGGTTAA 1379948 Score = 230 bits (254), Expect = 4e-56 Identities = 213/270 (79%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| ||||||||||| ||||||||||||||||||||| Sbjct 1446067 GCCAAGCGCCATCGCAAAGTTCTTCGTGATAACATCCAGGGAATCACCAAGCCAGCTATC 1446126 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||| ||||| ||||| ||| | ||||| ||| |||| ||||| | | Sbjct 1446127 CGTCGTCTCGCTCGTCGAGGTGGTGTCAAACGTATTTCTGGTTTGATCTACGAAGAAACT 1446186 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| | | ||| |||| |||||| || ||| || || Sbjct 1446187 CGTGGTGTCCTCAAGGTTTTCCTTGAAAACGTCATCCGTGATGCAGTCACCTACACTGAA 1446246 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || |||||||| ||||||| || |||||||||||||| Sbjct 1446247 CACGCCAAAAGGAAGACAGTTACAGCCATGGATGTCGTCTACGCTCTGAAACGTCAAGGC 1446306 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || |||||| | ||| || Sbjct 1446307 CGTACTCTCTACGGATTTGGAGGCTAAACT 1446336 Score = 221 bits (244), Expect = 2e-53 Identities = 209/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | |||||| ||||||||||| ||||||||||| ||||| ||| Sbjct 1372087 GCCAAGCGCCATCGTAAAGTTCTTCGTGATAACATCCAGGGAATCACCAAACCAGCCATC 1372028 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||| ||||| ||||| ||| | ||||| ||| |||| ||||| | | Sbjct 1372027 CGTCGTCTCGCTCGTCGAGGTGGTGTCAAACGTATTTCTGGTTTGATCTACGAAGAAACT 1371968 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | ||| | ||||| ||| ||| |||| |||||| || |||||| || Sbjct 1371967 CGTGGTGTTCTTAAGGTATTCCTTGAGAACGTCATCCGTGATGCAGTCACCTATACTGAA 1371908 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || ||||||| | ||||| || ||||||||||||||| Sbjct 1371907 CACGCCAAGAGGAAGACAGTAACAGCCATGGACGTTGTCTACGCTTTGAAACGTCAAGGC 1371848 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || |||||| ||||| Sbjct 1371847 CGCACTCTCTACGGATTTGGAGGTTAA 1371821 Score = 221 bits (244), Expect = 2e-53 Identities = 209/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | | |||||| ||||||||||| ||||| ||||| ||||| ||| Sbjct 1824941 GCTAAGCGCCATCGTAAAGTTCTTCGTGATAACATCCAGGGAATTACCAAACCAGCCATC 1825000 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||| ||||| ||||| ||| | ||||| ||| |||| ||||| | | Sbjct 1825001 CGTCGTCTCGCTCGTCGAGGTGGTGTCAAACGTATTTCTGGTTTGATCTACGAAGAAACT 1825060 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 1825061 CGTGGTGTCCTCAAGGTATTCCTTGAGAACGTCATCCGTGATGCAGTCACCTACACCGAA 1825120 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||||||||| | ||||| | ||||| ||||||||||||||||| Sbjct 1825121 CACGCCAAAAGGAAGACTGTCACAGCTATGGACGTTGTCTACGCATTGAAACGTCAAGGT 1825180 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 1825181 CGCACTCTCTACGGATTCGGAGGTTAA 1825207 Score = 217 bits (240), Expect = 2e-52 Identities = 216/280 (77%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | |||||| ||||||||||| ||||||||||| ||||| ||| Sbjct 1367563 GCCAAGCGCCATCGTAAAGTTCTTCGTGATAACATCCAGGGAATCACCAAACCAGCCATC 1367504 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||| ||||| ||||| ||| | ||||| || |||| ||||| | | Sbjct 1367503 CGTCGTCTCGCTCGTCGAGGTGGTGTCAAACGTATTTCTGGTTTAATCTACGAAGAAACT 1367444 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | ||| | ||||| ||| |||||||| ||||| || |||||| || Sbjct 1367443 CGTGGTGTTCTCAAGGTATTCCTTGAGAACGTTATCCGCGATGCAGTCACCTATACTGAA 1367384 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || ||||||| | ||||| || |||||||||||||| Sbjct 1367383 CACGCCAAGAGGAAGACAGTAACAGCCATGGACGTTGTCTACGCTTTGAAACGTCAAGGT 1367324 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAA 16712 || | |||| || |||||| ||||| | | |||||| Sbjct 1367323 CGCACTCTTTACGGATTTGGAGGTTAAGAGTTTCATCAAA 1367284 Score = 212 bits (234), Expect = 1e-50 Identities = 207/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | |||||| ||||||||||| ||||||||||| ||||| ||| Sbjct 1834844 GCCAAGCGCCATCGTAAAGTTCTTCGTGATAACATCCAGGGAATCACCAAACCAGCCATC 1834903 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||| ||||| ||||| ||| | ||||| ||| |||| ||||| | | Sbjct 1834904 CGTCGTCTCGCTCGTCGAGGTGGTGTCAAACGTATTTCTGGTTTGATCTACGAAGAAACT 1834963 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| || |||| |||||| || ||| ||||| Sbjct 1834964 CGTGGTGTCCTCAAGGTATTCCTTGAGAATGTCATCCGTGATGCAGTCACCTACACCGAA 1835023 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| | ||||| | ||||| || |||||||||||||| Sbjct 1835024 CACGCCAAGAGGAAGACCGTCACAGCTATGGACGTTGTCTACGCCCTGAAACGTCAAGGC 1835083 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || |||||| ||||| Sbjct 1835084 CGTACTCTCTACGGATTTGGAGGTTAA 1835110 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | |||||| || ||||||||||| || || || |||||||| Sbjct 1019327 GCCAAGCGCCATCGAAAAGTTCTTCGTGACAACATCCAAGGCATTACTAAACCAGCTATT 1019386 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||| || || || || || ||| | || |||||| | |||||||||| | Sbjct 1019387 CGTCGTTTGGCTCGCCGAGGAGGTGTTAAACGTATTTCGGGATTGATTTATGAAGAGACT 1019446 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | ||| |||| || ||| || |||| ||||||| | |||||| || Sbjct 1019447 CGTGGTGTTCTCAAGGTCTTTCTGGAGAATGTCATCCGTGATGCTGTTACCTATACTGAA 1019506 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||||||||| | |||||| ||||||| ||| ||||||||||||| Sbjct 1019507 CACGCCAAGAGGAAGACTGTCACAGCTATGGATGTCGTCTACGCACTGAAACGTCAAGGA 1019566 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || |||||| ||||| Sbjct 1019567 CGCACTCTTTACGGATTTGGAGGTTAA 1019593 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | |||||| ||||||||||| ||||| ||||| ||||| ||| Sbjct 1830695 GCCAAGCGCCATCGTAAAGTTCTTCGTGATAACATCCAGGGAATTACCAAACCAGCCATC 1830636 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||| ||||| ||||| ||| | ||||| ||| |||| ||||| | | Sbjct 1830635 CGTCGTCTCGCTCGTCGAGGTGGTGTCAAACGTATTTCTGGTTTGATCTACGAAGAAACT 1830576 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| |||||| || ||| || || Sbjct 1830575 CGTGGTGTCCTCAAGGTATTCCTTGAGAACGTCATCCGTGATGCAGTCACCTACACTGAA 1830516 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| ||||| | |||||| | |||||||| ||||||||||||| Sbjct 1830515 CACGCCAAAAGGAAGACCGTCACAGCGATGGATGTTGTCTATGCCCTGAAACGTCAAGGT 1830456 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 1830455 CGCACTCTCTACGGATTCGGAGGTTAA 1830429 Score = 86.0 bits (94), Expect = 1e-12 Identities = 168/247 (68%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 16434 CTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCA------G 16487 |||| | ||||| || | |||||||||| |||||||||||||| || || || | Sbjct 2457482 CTAAACATCATCACAAAGCTCTTCGAGACAACATCCAAGGAATTACAAAAACAAAACTCG 2457541 Query 16488 CTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAG 16547 | || || ||||| | ||||| ||| || || ||| ||||| | ||| | || |||| Sbjct 2457542 CCATTCGCTGTCTGCCGCGTCGAGGT---GTTAAACGTATCTCTAGGTTGATTTACGAAG 2457598 Query 16548 AGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATA 16607 ||||| | || || | | || || | | |||||| | ||||| | | | | | Sbjct 2457599 CAATTCGGGGCGTATTCTAAGTATTTCTTGAAAACGTTATTCGTGATGTTGTTATCCACA 2457658 Query 16608 CCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTC 16667 | || ||||| || || |||| | || | |||| ||| || || | ||||||||| Sbjct 2457659 CTGAACACGCCAAGCGAAAGATAATAACAGCTATGG-TATTGTTTACGTTCTGAAACGTC 2457717 Query 16668 AAGGCCG 16674 ||| ||| Sbjct 2457718 AAGACCG 2457724 >seq183 Length=158600 Score = 86.0 bits (94), Expect = 1e-12 Identities = 142/198 (72%), Gaps = 9/198 (5%) Strand=Plus/Minus Query 14235 TAAAAATGCTAGCCGTAAGATGGACGGTGTGGCTTAATGTATATAGAATAAGTGAAAGGA 14294 |||||||| | |||||| || ||||||||||| | ||| | | | | | |||| ||| Sbjct 126518 TAAAAATGGTTGCCGTATGAAGGACGGTGTGGTTCAATATTGACAAATGATTTGAATGGA 126459 Query 14295 AATTTAGTATAGA-CCGGATAGCTCAAAT-GGTAGAGTAGCCGACATGTCTTCGGAAGGT 14352 || | |||||| | ||||||||||| | || |||| | ||||| || ||||||||| Sbjct 126458 AA-TCAGTATATATTCGGATAGCTCAGTTGGGGAGAGCACCCGACTGGTAATCGGAAGGT 126400 Query 14353 TCTGGGTTCGAATCCCAGTCCG-AGCTATCTAATAATTTTTTCTCGCATATTCTATACAC 14411 | |||||||| | || ||| | | ||||| |||||||||| | || | | || || Sbjct 126399 CCCGGGTTCGATTTCCGGTCTGAAAATATCT--CAATTTTTTCTGGAATTATTTGTAGAC 126342 Query 14412 T---CACATTAAGAAGTT 14426 | | ||| ||||||| Sbjct 126341 TAAATATATTGAGAAGTT 126324 Score = 82.4 bits (90), Expect = 1e-11 Identities = 119/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 9798 TAAAAATGCTAGCCGTAAGATGGACGGTGTGGCTTAATGTATATAGAATAAGTGAAAGGA 9857 |||||||| | |||||| || ||||||||||| | ||| | | | | | |||| ||| Sbjct 126518 TAAAAATGGTTGCCGTATGAAGGACGGTGTGGTTCAATATTGACAAATGATTTGAATGGA 126459 Query 9858 AATTTAGTATAGA-CCGGATAGCTCAAAT-GGTAGAGTAGCCGACATGTCTTCGGAAGGT 9915 || | |||||| | ||||||||||| | || |||| | ||||| || ||||||||| Sbjct 126458 AA-TCAGTATATATTCGGATAGCTCAGTTGGGGAGAGCACCCGACTGGTAATCGGAAGGT 126400 Query 9916 TCTGGGTTCGAATCCCAGTCCG-AGCTATCTAATAATTTTTT 9956 | |||||||| | || ||| | | ||||| |||||||| Sbjct 126399 CCCGGGTTCGATTTCCGGTCTGAAAATATCT--CAATTTTTT 126360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074247292106