Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq211 114 1e-21 seq163 111 2e-20 seq177 109 6e-20 seq158 98.7 1e-16 seq80 96.9 4e-16 seq238 95.1 1e-15 seq34 93.3 4e-15 seq377 91.5 2e-14 seq188 89.7 5e-14 seq261 84.2 2e-12 >seq211 Length=121736 Score = 114 bits (126), Expect = 1e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 732 TGGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTG 791 |||||| || || |||| |||||||| | |||||||||||||| || || || || Sbjct 20495 TGGGCATTCGGGAGAATCTTCATGCTTAAACTTATGGAGATACGCCCGAAAGCACCCATG 20554 Query 792 TCCTGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAAC 851 ||||| | |||||| || | ||| || ||||| ||||||| | | || || ||||| || Sbjct 20555 TCCTGTCAGCATCTGGGTTACATAGTAATTGACTTCACCGTAATTTCGATTCAGCCATAC 20614 Query 852 GTTGATCCTTGGTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCACTGTAG 911 ||| | ||||||||||| | ||||||| || || ||| || ||||||| | Sbjct 20615 ACCTATCTTAGGTATGAGACGGTAGGTCCATCGCCCTTTACCTGAGGTGTCCCACTTCTG 20674 Query 912 TTGCCATCGACTTATGCT 929 |||||||| | ||||| Sbjct 20675 CTGCCATCGGTTGATGCT 20692 >seq163 Length=191640 Score = 111 bits (122), Expect = 2e-20 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 727 CAGGATGGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAG 786 |||| |||||||| |||| || ||| |||| || ||||| || |||| || || Sbjct 5045 CAGGTCGGGCACTCCGGGGTATCCTCACGCTTAATTCGATGGAGGTATTCCCGAAAGCAC 5104 Query 787 CCGTGTCCTGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGC 846 || |||||||| |||||||| || || || || |||||||||||||| |||| |||||| Sbjct 5105 CCATGTCCTGACAACATCTGCGTGAGGTAGTAATTGACCTCACCGTGCTTCCGATTTAGC 5164 Query 847 CAAACGTTGATCCTTGGTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCAC 906 ||| ||| | | | ||| | ||| || ||||| || || || || | |||||| Sbjct 5165 CAATCGTCTACCTGTTGTACCACACGGTGGGTCCACCTGCCCTTAGTTGAGCGGTCCCAC 5224 Query 907 TGTAGTTGCCATCGACTTATGCTCCTCCG 935 | ||||| ||| ||||||||||| Sbjct 5225 AATTCCTGCCACCGAGCGATGCTCCTCCG 5253 >seq177 Length=160944 Score = 109 bits (120), Expect = 6e-20 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 732 TGGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTG 791 |||||| || || |||| |||||||| | |||||||||||||| || || || || Sbjct 71514 TGGGCATTCGGGAGAATCTTCATGCTTAAACTTATGGAGATACGCCCGAAAGCACCCATG 71573 Query 792 TCCTGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAAC 851 ||||| | |||||| || | ||| || ||||| ||||||| | | || || ||||| || Sbjct 71574 TCCTGTAAGCATCTGGGTTACATAGTAATTGACTTCACCGTAATTTCGATTCAGCCATAC 71633 Query 852 GTTGATCCTTGGTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCACTGTAG 911 ||| | ||||||||||| | ||||||| || || ||| || ||||||| | Sbjct 71634 ACCTATCTTAGGTATGAGACGGTAGGTCCATCGCCCCTTACCTGAGGTGTCCCACTTCTG 71693 Query 912 TTGCCATCGACTTATGCT 929 |||||| | | ||||| Sbjct 71694 CTGCCATAGGTTGATGCT 71711 >seq158 Length=198227 Score = 98.7 bits (108), Expect = 1e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 727 CAGGATGGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAG 786 |||| |||||||| |||| || || ||| || ||||| || |||| || || Sbjct 31233 CAGGTCGGGCACTCCGGGGTATCCTCTCACTTAATTCGATGGAGGTATTCCCGAAAGCAC 31292 Query 787 CCGTGTCCTGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGC 846 || |||||||| |||||||| || || || || |||||||||||||| |||| ||| || Sbjct 31293 CCATGTCCTGACAACATCTGCGTGAGGTAGTAATTGACCTCACCGTGCTTCCGATTTGGC 31352 Query 847 CAAACGTTGATCCTTGGTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCAC 906 ||| ||| | | | ||| | ||| || ||||| || || || || | |||||| Sbjct 31353 CAATCGTCTACCTGTTGTACCACACGGTGGGTCCACCTGCCCTTAGTTGAGCGGTCCCAC 31412 Query 907 TGTAGTTGCCATCGACTTATGCTCCTCCG 935 | ||||| ||| ||||||||||| Sbjct 31413 AATTCCTGCCACCGAGCGATGCTCCTCCG 31441 >seq80 Length=672383 Score = 96.9 bits (106), Expect = 4e-16 Identities = 143/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 732 TGGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTG 791 |||||| || || |||| |||||||| | |||||||||||||| || || || || Sbjct 533842 TGGGCATTCCGGAGAATCTTCATGCTTAAACTTATGGAGATACGCCCGAAAGCACCCATG 533783 Query 792 TCCTGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCG-----GTTTAGC 846 ||||| | |||||| || | ||| || ||||| ||||||| | | || | || || Sbjct 533782 TCCTGTAAGCATCTGGGTTACATAGTAATTGACTTCACCGTAATTTCGATTTCGATTTGC 533723 Query 847 CAAACGTTGATCCTTGGTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCAC 906 || || ||| | ||||||||||| | |||||| || || ||| || |||||| Sbjct 533722 CATACACCTATCTTAGGTATGAGACGGTAGGTCCATTGCCCCTTACCTGAGGTGTCCCAC 533663 Query 907 TGTAGTTGCCATCGACTTATGCT 929 | | |||||||| | ||||| Sbjct 533662 TTCTGCTGCCATCGGTTGATGCT 533640 >seq238 Length=97200 Score = 95.1 bits (104), Expect = 1e-15 Identities = 178/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 676 AAACGTGAGCA-CTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGG 734 ||||| | ||| || ||| | ||| ||||| ||||||||| ||| ||||||| ||| Sbjct 6835 AAACGGGGGCATCTGAAA-ACAACATGCTCCACATCTTCATCTTCTCTCGGGCAGGCTGG 6893 Query 735 GCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCC 794 || | || |||| |||||||| | | |||||||| | ||| || || || || Sbjct 6894 ACATTTCGGCGAATCGTCATGCTTAAATTTATAAAGATACGCTCTGAAGCATCCATGCCC 6953 Query 795 TGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAACGTT 854 || | ||||| || | || ||||||||||||||||| | || || |||||||| | Sbjct 6954 AGAGAGGATCTGCGTCACGTAGTAGTTGACCTCACCGTGTCCGCGATTGAGCCAAACATC 7013 Query 855 GATCCTTGGTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCACTGTAGTTG 914 | | || || || ||||| || ||||| || || | | ||||| | | | || Sbjct 7014 CACTTTGGGGATCAGGCGATGAGTTCATCTCCCCTTGGTGGAGTTGTCCCATTCTCGCTG 7073 Query 915 CCATCGACTTATGCTCCTC 933 ||| || || | |||| || Sbjct 7074 CCAACGCCTCAGGCTCTTC 7092 >seq34 Length=1213515 Score = 93.3 bits (102), Expect = 4e-15 Identities = 123/165 (75%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 691 AAGAAAACGTGCTCTGCATCTTC-ATTGAC--TCCTGGGCAGGATGGG-CACTCTGGGGA 746 || || ||||| || ||||| || || | | ||| |||| ||||| ||||||||||| Sbjct 774089 AAAAACACGTGTTCCGCATCCTCGATCGCCGGTCC---GCAG-ATGGGACACTCTGGGGA 774144 Query 747 ATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCCTGATAACATCTG 806 | || |||| ||||| || ||| |||||| || ||||| |||| | |||||| Sbjct 774145 GTCCTCCGCCTTGATCCGGTGAAGGTACTGCCGGAAGCACCCGTGCCCTGTAAGCATCTG 774204 Query 807 TGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAAC 851 || || || |||||||| || ||||| |||||||| |||||||| Sbjct 774205 CGTCAGGTAGTAGTTGACTTCCCCGTGGCTCCGGTTCAGCCAAAC 774249 >seq377 Length=38827 Score = 91.5 bits (100), Expect = 2e-14 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 732 TGGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTG 791 |||||| || || |||| |||||||| | | ||||||| ||| || || || || Sbjct 18164 TGGGCATTCGGGAGAATCTTCATGCTTAAACTTATCGAGATACACCCAAAAGCACCCATG 18223 Query 792 TCCTGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAAC 851 ||||| | ||||| || | ||| || ||||| |||||| | | || || ||||| || Sbjct 18224 TCCTGTAAGTATCTGGGTTACATAGTAATTGACTGCACCGTAATTTCGATTCAGCCATAC 18283 Query 852 GTTGATCCTTGGTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCACTGTAG 911 ||| | ||||||||||| | ||||||| || || ||| || ||||||| | Sbjct 18284 ACCTATCTTAGGTATGAGACGGTAGGTCCATCGCCCCTTAGCTGAGGTGTCCCACTTCTG 18343 Query 912 TTGCCATCGACTTATGCT 929 |||||||| | ||||| Sbjct 18344 CTGCCATCGGTTGATGCT 18361 >seq188 Length=151785 Score = 89.7 bits (98), Expect = 5e-14 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 676 AAACGTGAGCACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGGG 735 || || | ||| ||||||| || ||||||||||| ||| ||| |||| ||| Sbjct 136441 AACCGCGGGCAGGCAAAGAAGACATGCTCTGCATCCTCAACCGTCCCTAGGCAACTCGGG 136500 Query 736 CACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCCT 795 || || ||||| | ||||| | | | || ||||| |||||||||| ||||| || Sbjct 136501 CAATCCGGGGAGTCGTCATGGCCGAACCTATGAAGATATCCCCGGAAACACCCGTGCCCA 136560 Query 796 GATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAACGTTG 855 || | || ||||| || || | || |||||||| || ||||||| | ||| | | Sbjct 136561 GAGAGCAGTTGTGTGAGGTAGAAATTCACCTCACCATGTTTCCGGTTGACCCATTCATCC 136620 Query 856 ATCCTTGGTATGAGACGATGCGTCCATCTACCATTCA 892 | ||||| || || || || ||||| || || |||| Sbjct 136621 ACCCTTGTAATCAGGCGGTGGGTCCACCTCCCTTTCA 136657 >seq261 Length=99891 Score = 84.2 bits (92), Expect = 2e-12 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 700 TGCTCTGCATCTTCATTGACTCCTGGGCAGGATGGGCACTCTGGGGAATTATCATGCTTG 759 ||||| || || ||| | ||||| |||| |||||||||||| || ||| ||| Sbjct 44690 TGCTCCGCGTCCTCAACAATCCCTGGACAGGTAGGGCACTCTGGGTTATCATCGTGCCCA 44631 Query 760 GAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCCTGATAACATCTGTGTAAGATAATAG 819 | | ||| || || | ||||||||||||||||| || | || ||| || | |||| || Sbjct 44630 AACCTGTGCAGGTAACCACGGAAACAGCCGTGTCCGGACAGCAGCTGCGTGACATAAAAG 44571 Query 820 TTGACCTCACCGTGACTCCGGTTTAGCCAAACGTTGATC-CTT--GGTATGAGACGATGC 876 || || | || |||| || | ||||| | | || ||| || || ||||||| Sbjct 44570 TTTACTGCCCCATGACGTCGCTCGAGCCA---GGTCCTCACTTTCGGAATTAGACGATAG 44514 Query 877 GTCCATCTACCATTCACTGTGGCATCCCACTGTAGTTGCCA 917 ||||| || || ||| | ||| ||||| ||| | ||||| Sbjct 44513 GTCCACCTTCCCTTCCTCGAGGCCTCCCAGTGTTGCTGCCA 44473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50949786143212