Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq45 165 1e-36 seq54 131 2e-26 seq22 127 3e-25 seq71 125 1e-24 seq122 122 1e-23 seq154 89.7 7e-14 seq35 87.8 2e-13 seq8 87.8 2e-13 seq7 86.0 9e-13 seq76 82.4 1e-11 >seq45 Length=1006432 Score = 165 bits (182), Expect = 1e-36 Identities = 192/261 (74%), Gaps = 40/261 (15%) Strand=Plus/Minus Query 439 AATAGTATATTACACTACAAGAGCAGAAAGTTGAGATTCCTGCACTGCG----------- 487 ||||||||||||||||||||| |||||||||||| ||||||||| ||| Sbjct 985639 AATAGTATATTACACTACAAGGGCAGAAAGTTGAATTTCCTGCACAGCGCGTGATGATGC 985580 Query 488 ----------------GGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATG 531 |||||||| | ||| |||||||| | |||| | |||||||||| Sbjct 985579 CCGAGGCGAAGCCGAGGGCATCATAACGCGCTGTTCAGGGATTTCAACTATCTGCCCATG 985520 Query 532 TAGTGTATACTATTTTTCTTGCTATGCGGTCGAAAGTACG------TTAAAAAT-TGCGT 584 |||||||||||||||||||| || |||||||||||||| || | || | Sbjct 985519 TAGTGTATACTATTTTTCTTCATAGCCGGTCGAAAGTACGGACTGTTTGTTCGTATGTAT 985460 Query 585 TGAAA-ATA-ATTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTG 642 |||| || |||| ||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 985459 CGAAAGGTATCTTGACGCCTG-CCCCGACATTTGCTGCACGAGCGAAGCGAGTGCTGCTG 985401 Query 643 GTCggggggggCAGGCATCAA 663 ||| |||||||||| |||| Sbjct 985400 GTC---GGGGGCAGGCGTCAA 985383 >seq54 Length=895341 Score = 131 bits (144), Expect = 2e-26 Identities = 133/169 (79%), Gaps = 11/169 (7%) Strand=Plus/Plus Query 487 GGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTT 546 |||||||||| | ||| |||| ||| | |||||| || |||||||||||||||||||||| Sbjct 223246 GGGCATCATGACGCGCTGTTCCGGGATTTCAAATATCAGCCCATGTAGTGTATACTATTT 223305 Query 547 TTCTTGCTATGCGGTCGAAAGTACG-------TTAAAAATTGCGTTGAAA-ATA-ATTGA 597 || || || ||| |||||||||| || || | |||| || ||||| Sbjct 223306 TT-TTCATAGTCGGCCGAAAGTACGGACGGTTTTTCCGCGTGTATCGAAAGGTATATTGA 223364 Query 598 TGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCg 646 |||||| ||||||||||||| ||| |||||||||||||||||||||||| Sbjct 223365 TGCCTG-CCCCGACATTTGCTGCATGAGCGAAGCGAGTGCTGCTGGTCG 223412 >seq22 Length=1453673 Score = 127 bits (140), Expect = 3e-25 Identities = 107/130 (82%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 440 ATAGTATATTACACTACAAGAGCAGAAAGTTGAGATTCCTGCACTGCGGGCATCATGGCA 499 ||||||||||||||||||||||||||||| | | |||||| || ||||||||||| Sbjct 605025 ATAGTATATTACACTACAAGAGCAGAAAGGTAAATTTCCTG-AC----GGCATCATGGCG 604971 Query 500 CGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTTTTCTTGCTATGCG 559 ||| |||||||| | |||| ||||||| | ||||||||| |||||||||| || || Sbjct 604970 CGCGGTTCAGGGATTTCAACGATCTGCCCGTATAGTGTATATTATTTTTCTTTATACCCG 604911 Query 560 GTCGAAAGTA 569 |||||||||| Sbjct 604910 GTCGAAAGTA 604901 >seq71 Length=708426 Score = 125 bits (138), Expect = 1e-24 Identities = 140/183 (77%), Gaps = 13/183 (7%) Strand=Plus/Minus Query 489 GCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTTTT 548 ||||||| | | | |||||| | | | || | ||||||||||||||||||||||||||| Sbjct 681630 GCATCATAACGCACTGTTCAGCGGTTTTAACTATCTGCCCATGTAGTGTATACTATTTTT 681571 Query 549 CTTGCTATGCGGTCGAAAGTACG------TTAAAAAT-TGCGTTGAAAATAAT--TGATG 599 ||| || |||||||||||||| || | || | |||| || ||| | Sbjct 681570 CTTCATAGCCGGTCGAAAGTACGGACTGTTTGTTCGTGTGTATCGAAAGCTATCTTGACG 681511 Query 600 CCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggggggCAGGCA 659 |||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 681510 CCTGCCCC-GACATTTGCTGCACGAGCGAAGCGAGTGCTGCTGGCC---GGGGGCAGGCG 681455 Query 660 TCA 662 ||| Sbjct 681454 TCA 681452 >seq122 Length=326076 Score = 122 bits (134), Expect = 1e-23 Identities = 184/264 (70%), Gaps = 42/264 (16%) Strand=Plus/Plus Query 435 AAACAATAGTATATTACACTACAAGAGCAGAAAGTTGAGATTCCTGCACTGCG------- 487 ||| |||||||||| |||||||||| |||||| ||||| ||||||||||||| Sbjct 258831 AAATAATAGTATATCACACTACAAGGGCAGAACGTTGAATTTCCTGCACTGCGCGTCATG 258890 Query 488 -------------------GGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCC 528 ||| ||||| ||| ||||||| | |||| | |||| | Sbjct 258891 CAGCCCGAGGCGAAGCCGAGGCGTCATGATGCGCTGTTCAGGATTTTCAACTATCTGTTC 258950 Query 529 ATGTAGTGTATACTATTTTTCTTGCTATGCGGTCGAAAGTACG------TTAAAAAT-TG 581 |||||||||||||||| ||||| || | | |||||||| | || || | || Sbjct 258951 TTGTAGTGTATACTATTGTTCTTCATACCCAGACGAAAGTATGGACTGCTTGCAAGTGTG 259010 Query 582 CGTTGAAA-ATA-ATTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTG 639 | |||||| ||| |||||||| ||||| |||||||| ||||||| |||| ||| ||| Sbjct 259011 CATTGAAAGATATATTGATGCTTGCCC----CATTTGCGACACGAGCAAAGCCAGTACTG 259066 Query 640 CTGGTCggggggggCAGGCATCAA 663 ||| | ||||||||||||||| Sbjct 259067 CTGCCC---GGGGGCAGGCATCAA 259087 >seq154 Length=208084 Score = 89.7 bits (98), Expect = 7e-14 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 439 AATAGTATATTACACTACAAGAGCAGAAAGTTGAGATTCCTGCACTGCGGGCATCATGGC 498 ||||| |||||| ||| |||| |||||||||||| |||||||| |||| | |||| | Sbjct 133418 AATAGCATATTATACTGCAAGGGCAGAAAGTTGAATTTCCTGCATTGCGTG--GCATGAC 133361 Query 499 ACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTTTTCTTGCTATGC 558 |||| ||||| | | | || | ||||||| | ||| || |||||||| || || | Sbjct 133360 ACGCTTTTCAGAGATTTTAACTATCTGCCCGTAGAGTCTACACTATTTTCATTTATACCC 133301 Query 559 GGTCGAAAGTA 569 |||||||||| Sbjct 133300 CGTCGAAAGTA 133290 >seq35 Length=1220468 Score = 87.8 bits (96), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 7/140 (5%) Strand=Plus/Minus Query 436 AACAATAGTATATTACACTACAAGAGCAGAAAGTTGAGATTCCTGCACTG----CGGGC- 490 || |||||||||||||| |||||| |||||| ||||| |||| |||||| | || Sbjct 438692 AAAAATAGTATATTACAGTACAAGGGCAGAATGTTGAATTTCCCGCACTGACATCATGCT 438633 Query 491 -ATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTTTTC 549 ||| || | ||| |||| | | |||| | ||||||||| ||||| ||||||||||| Sbjct 438632 TATCCTGACGCGCTCCTCAGTGATTTCAACTACCTGCCCATGCAGTGTGTACTATTTTTC 438573 Query 550 TTGCTATGCGGTCGAAAGTA 569 || | ||||||||| || Sbjct 438572 TT-CACACCGGTCGAAAATA 438554 >seq8 Length=1915603 Score = 87.8 bits (96), Expect = 2e-13 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 439 AATAGTATATTACACTACAAGAGCAGAAAGTTGAGATTCCTGCACTGCGGGCATCATGGC 498 ||||| | |||| |||||| | ||| || || | ||||||||||||| |||||| Sbjct 565085 AATAGGAAATTATACTACAGGGGCAAAATCTTAAATTTCCTGCACTGCGCATATCATGAT 565026 Query 499 ACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTTTTCTTGCTATGC 558 ||| ||| || | |||| ||||||| | |||||||||||||||||| | || Sbjct 565025 GCGCTAGTCACGGATTTCAACAATCTGCCCGTATAGTGTATACTATTTTTCGTTATAGCA 564966 Query 559 GGTCGAAAGTACG 571 ||||||||||||| Sbjct 564965 GGTCGAAAGTACG 564953 >seq7 Length=2059422 Score = 86.0 bits (94), Expect = 9e-13 Identities = 119/159 (75%), Gaps = 17/159 (11%) Strand=Plus/Minus Query 538 ATACTATTTTTCTTGCTATGCGGTCGAAAGTACG------TTAAAAAT-TGCGTTGAAA- 589 |||||||||||||| | |||| | ||||||| || | | ||| | |||| Sbjct 1663501 ATACTATTTTTCTTCAAAGCCGGTTGCAAGTACGGACTGATTGCATGTGTGCATCGAAAG 1663442 Query 590 ATA-ATTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggg 648 ||| |||||| |||||| | |||||||||||||||||||||| |||||||||||| | Sbjct 1663441 ATATATTGATACCTGCCTC-GACATTTGCGGCACGAGCGAAGTGAGTGCTGCTGGCC--- 1663386 Query 649 gggggCAGGCATCAAATACACCTGTCAATAAAGATATTA 687 |||||||||| || ||| | | || |||||||||| Sbjct 1663385 GGGGGCAGGCGTC-GATAAAAAT---AAAAAAGATATTA 1663351 >seq76 Length=671789 Score = 82.4 bits (90), Expect = 1e-11 Identities = 62/71 (87%), Gaps = 4/71 (6%) Strand=Plus/Minus Query 593 ATTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggggg 652 ||||||||||||||| ||||||||||||||||||||||| |||| |||||||| || Sbjct 545527 ATTGATGCCTGCCCC-GACATTTGCGGCACGAGCGAAGCTAGTGTTGCTGGTC---AGGA 545472 Query 653 gCAGGCATCAA 663 |||||| |||| Sbjct 545471 GCAGGCCTCAA 545461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68322376833546