Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_006649.1 Length=32108 Score E Sequences producing significant alignments: (Bits) Value seq43 170 4e-38 seq192 165 2e-36 seq121 140 7e-29 seq156 131 3e-26 seq194 129 1e-25 seq176 122 2e-23 seq6 122 2e-23 seq129 89.7 1e-13 seq25 89.7 1e-13 seq217 84.2 4e-12 seq91 82.4 2e-11 >seq43 Length=1079605 Score = 170 bits (188), Expect = 4e-38 Identities = 174/220 (79%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 718 ATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTTGACCGA 777 ||| ||||||||||| || |||| || || |||||||| |||||| ||||||| ||| Sbjct 27734 ATTGCATACCTAGGC-AGGAAAAAAA--AATGTCTCAGATCACATGAAATTGTTAGTCGA 27678 Query 778 GGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCCAAGGTGT 837 ||||||||| ||| ||||||||||||||||||||| | | ||||||| ||| |||||| Sbjct 27677 GGCGAAGCCGAGGCTGACAAACATGTGATCTGAGG-TATTTTTTTTACCGGCTGAGGTGT 27619 Query 838 GTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGCGCA--GCGG 895 |||||| |||||||||||||||| |||| ||| | | || ||| | |||| || | Sbjct 27618 GTATACAATTTTTCTGCTCGACG-AGCCAGAAAATCGTAA-TTTCTCGGCCGCACGGCAG 27561 Query 896 CCAGAAAGTTGTCACTTTCCGGCCGGAGGGCAGAAAATGT 935 || | |||||| || ||| |||| ||| |||||||| || Sbjct 27560 CCGGGAAGTTGCGACCTTCTGGCCAGAGAGCAGAAAACGT 27521 Score = 91.5 bits (100), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 712 TAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTT 771 ||||||||||||||||||||| ||| ||| || ||| | || | ||||||| |||| Sbjct 639486 TAGTATATTACATACCTAGGCTAGTGAAAGAAGAAACGCCTGGAATCACATGT--TTGTC 639543 Query 772 GACCGAGGCGAAGCCAAGGTTGACAAA--CATGTGATCTGAGGCTTTACTTTTTACTGGC 829 || ||| |||| |||| ||||||||||||| | || |||||||||||| Sbjct 639544 AGCCTCGGCTTCGCCACAACCAACAAGTTCATGTGATCTGAGACATTCCTTTTTACTGGC 639603 Query 830 CAAGGTGTGTATACTATTTTTCT 852 | ||| ||| |||| |||||||| Sbjct 639604 CGAGGGGTGCATACAATTTTTCT 639626 Score = 89.7 bits (98), Expect = 1e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 726 CCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTTGACCGAGGCGAAGC 785 ||| ||||||||||| | || |||||||| |||||| | |||||| | |||||||| Sbjct 639608 CCTCGGCCAGTAAAA--AGGAATGTCTCAGATCACATGAACTTGTTGGTTGTGGCGAAGC 639551 Query 786 CAAGGTTGACAAACATGTGATCTGAGGCTTTACT--TTTTACTGGCCAAGGTGTGTA 840 | ||| ||||||||||||||| |||| || || ||| ||| ||| |||| |||| Sbjct 639550 CGAGGCTGACAAACATGTGATTCCAGGCGTTTCTTCTTTCACTAGCCTAGGTATGTA 639494 >seq192 Length=145928 Score = 165 bits (182), Expect = 2e-36 Identities = 134/160 (84%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||||||||||||| ||||| ||||||| || || |||||||| || | | |||| | Sbjct 74760 ATAGTATATTACATACTTAGGCTAGTAAAAAAAGAACGGTCTCAGACCAAACGAAATTTT 74701 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGC-TTTACTTTTTACTGGC 829 || |||||| |||||| ||| |||||||||||||||||||||| ||| |||||||||| Sbjct 74700 TGGCCGAGGTGAAGCCGAGGCTGACAAACATGTGATCTGAGGCATTTTTTTTTTACTGGT 74641 Query 830 CAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAA 869 | || |||||||| |||||||||||||| | |||| ||| Sbjct 74640 CGAGAGGTGTATACGATTTTTCTGCTCGATG-AGCCAGAA 74602 >seq121 Length=318528 Score = 140 bits (154), Expect = 7e-29 Identities = 168/226 (74%), Gaps = 18/226 (8%) Strand=Plus/Minus Query 712 TAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTT 771 ||||||||||||||||||||||| ||||| || ||| |||||||| || ||| | || Sbjct 311028 TAGTATATTACATACCTAGGCCAATAAAAAAACAAATGTCTCAGATCATATGACTCTATT 310969 Query 772 GACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCCA 831 | |||||||| ||| ||||| | ||||||| | || |||| ||||||| Sbjct 310968 GGCCGAGGCG-----------GACTAACATCTAATCTGAGACATTTTTTTTCACTGGCCG 310920 Query 832 AGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGT--TTAGCG 889 || || |||| |||||||||||||||| ||| ||| |||||| ||||| ||| Sbjct 310919 AGTCGTTAATACAATTTTTCTGCTCGACG-AGCGAGAAAATGGCAA-TTTGTCGGCCGCG 310862 Query 890 CAGCGGCCAG---AAAGTTGTCACTTTCCGGCCGGAGGGCAGAAAA 932 ||||| || ||||||| |||||| ||||| ||||||||||| Sbjct 310861 CAGCGTGTAGCGTGAAGTTGTGACTTTCTGGCCGAAGGGCAGAAAA 310816 >seq156 Length=204715 Score = 131 bits (144), Expect = 3e-26 Identities = 127/159 (80%), Gaps = 11/159 (7%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||| Sbjct 124707 ATAGTACATTACATACCTAGGCCAGTAAAA-----AAAGTCTCAGATCACATGACATTGT 124653 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 |||| || |||||| || |||| ||||| |||||| ||| | |||||||||||| Sbjct 124652 TGACTGAAGCGAAGTTGAGACTGACGAACATATGATCT-AGG---GATTTTTTACTGGCC 124597 Query 831 AAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAA 869 | ||||||||| | |||||||||| ||| |||| ||| Sbjct 124596 CCGCTGTGTATACGA-TTTTCTGCTCTACG-AGCCAGAA 124560 >seq194 Length=136920 Score = 129 bits (142), Expect = 1e-25 Identities = 132/171 (77%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 ||||||||||| ||||||| ||||||||| || ||| | |||||| ||||| ||||| Sbjct 12392 ATAGTATATTAAATACCTAATCCAGTAAAACAAGAAATGACTCAGATTACATGACATTGT 12451 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 || ||||| ||||||| || ||| || | ||||||||| ||| || |||||| ||||| Sbjct 12452 TGGCCGAGACGAAGCCGAGTTTGGCATAAATGTGATCTCAGGAATTTATTTTTATTGGCC 12511 Query 831 AAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTT 881 | | |||| | |||||||||||||| | || | ||| | ||||||| Sbjct 12512 ATAGCCTGTAGATGATTTTTCTGCTCGA-GAAGACAGAAAATTTCAACTTT 12561 >seq176 Length=174310 Score = 122 bits (134), Expect = 2e-23 Identities = 117/150 (78%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 ||||||||||||| |||||||| ||| ||| || || ||||||| |||||| |||| | Sbjct 127853 ATAGTATATTACAGACCTAGGCTAGTTAAAAAAGCAATATCTCAGATCACATGAAATTTT 127912 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 | | || | ||||| ||| | | |||||||| ||||||||| ||||| ||||| Sbjct 127913 TTCGCCAGTCAAAGCCGAGGCTAATAAACATGTAATCTGAGGC----ATTTTTCTTGGCC 127968 Query 831 AAGGTGTGTATACTATTTTTCTGCTCGACG 860 |||||||||||| |||||| |||| |||| Sbjct 127969 GAGGTGTGTATACGATTTTTGTGCTTGACG 127998 >seq6 Length=2247010 Score = 122 bits (134), Expect = 2e-23 Identities = 125/160 (78%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 711 ATAGTATATTACATACC--TAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATT 768 |||||| | || ||| | ||||||||| ||| | ||| ||| |||| |||||| |||| Sbjct 1636298 ATAGTACACTATATATCCATAGGCCAGTTAAAACAAAAATGTCCCAGATCACATGAAATT 1636239 Query 769 GTTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGG 828 ||| | || ||||||| |||||||||||| |||| | |||||| | |||| ||||| Sbjct 1636238 GTTAGCGGATGCGAAGCTGAGGTTGACAAACCTGTGGTTTGAGGCATCTTTTTTCACTGG 1636179 Query 829 CCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGA 868 | || |||||||| |||||||||||||||| |||| || Sbjct 1636178 TCGAG--GTGTATACGATTTTTCTGCTCGACG-AGCCAGA 1636142 Score = 95.1 bits (104), Expect = 2e-15 Identities = 118/160 (74%), Gaps = 14/160 (9%) Strand=Plus/Minus Query 710 TATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTG 769 || ||||||||||||| || | |||| | || | ||| || ||| ||||| ||| | Sbjct 1884715 TAAAGTATATTACATAGCTCGACCAGGAGAA-GAGAAATACCTGAGATTACATGAAATGG 1884657 Query 770 TTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGC 829 ||| ||||||| |||||||||| |||||||||| | | ||||||||| Sbjct 1884656 TTGGCCGAGGC-----------TGACAAACATATGATCTGAGGGAGT-TTCTTTACTGGC 1884609 Query 830 CAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAA 869 | |||||||||| | |||||||| ||||||| |||| ||| Sbjct 1884608 CGAGGTGTGTATTCAATTTTTCTACTCGACG-AGCCTGAA 1884570 >seq129 Length=297775 Score = 89.7 bits (98), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 5/114 (4%) Strand=Plus/Minus Query 737 AAAATAATAAAAGTCTCAGAACACATGTAATTGTTGACCGAGGCGAAGCCAAGGTTGACA 796 |||| || ||| || |||| ||| || |||||||| |||||||||||| || ||||| Sbjct 283796 AAAAAAAGAAATGTTACAGATCACCTGAAATTGTTGGTCGAGGCGAAGCCGAGACTGACA 283737 Query 797 AACATGTGATCTGAGGCTTTACTTTTTACTGGCCAAGGTGTGTATACTATTTTT 850 || | |||||||||| |||| |||| ||||| | |||||||| | |||||| Sbjct 283736 AAGAAGTGATCTGAGCCTTT--TTTT---TGGCCGAAGTGTGTATCCAATTTTT 283688 >seq25 Length=1373047 Score = 89.7 bits (98), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 712 TAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTT 771 |||||||| | |||||||||||||||||| || ||| || |||| |||||| ||||||| Sbjct 676016 TAGTATATCAAATACCTAGGCCAGTAAAAAAAGAAATGTGCCAGATCACATGAAATTGTT 675957 Query 772 GACCGAGGCGAAGCCAAGGTT--GACAAACATG 802 | ||||| ||||| | || | |||||||||| Sbjct 675956 GGCCGAGACGAAGTCGAGACTCAGACAAACATG 675924 >seq217 Length=121070 Score = 84.2 bits (92), Expect = 4e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 792 TGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCCAAGGTGTGTATACTATTTTTC 851 |||||||||||||||||||||| || |||||||||||||||||| |||||| || ||| Sbjct 3275 TGACAAACATGTGATCTGAGGCATTTTTTTTTACTGGCCAAGGTGGGTATACGATGTTTG 3216 Query 852 TGCTCG 857 | |||| Sbjct 3215 TACTCG 3210 >seq91 Length=489428 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 712 TAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTT 771 ||| ||||||||||||||||| |||||| || ||| |||||||| |||||| ||||||| Sbjct 92551 TAGGATATTACATACCTAGGCTGGTAAAACAAGAAATGTCTCAGATCACATGGAATTGTT 92492 Query 772 GACCGAGG 779 | |||||| Sbjct 92491 GGCCGAGG 92484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102622730156280