Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq146 295 2e-75 seq192 174 4e-39 seq164 140 9e-29 seq7 120 8e-23 seq58 109 1e-19 seq54 107 5e-19 seq13 91.5 4e-14 seq28 86.0 2e-12 >seq146 Length=235560 Score = 295 bits (326), Expect = 2e-75 Identities = 249/306 (81%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 40498 ATAAAAAATAGATGTCAATCAACAAAATATAGTCAACTTAAGTGTGAACACGTTTACAAA 40557 || ||||||| | |||||||||||||||| || ||| || ||||| |||| ||||||||| Sbjct 216666 ATGAAAAATAAACGTCAATCAACAAAATACAGACAAATTTAGTGTCAACATGTTTACAAA 216607 Query 40558 CATTCAGTATTAAGACAACAACGCCATTTTAACGTTTTCGGCGATACTTACGGTAGATAC 40617 |||| |||| || || || |||||||| ||||| | | | ||| || |||| ||| |||| Sbjct 216606 CATTTAGTAATAGGAAAATAACGCCATCTTAACATGTCCCGCGGTATTTACAGTAAATAC 216547 Query 40618 GAGGTTTTTGAATTCGAATATGTAGATACGAGAAAAATCAAAAGCCTCTaaaaaaaaTTC 40677 | ||||||| ||||||| |||| ||||||| ||||||||||| || ||||||| | || Sbjct 216546 GCGGTTTTTAAATTCGACCATGTTGATACGAAAAAAATCAAAATTCTTTAAAAAACAATC 216487 Query 40678 TATCATCTTTGTGAACATTGCATGTTTTGTTTTACGTTACAAGAGTGCTAAGGAGTGATT 40737 ||||||| | |||||||| |||| |||||||||| ||| ||| | || ||| || Sbjct 216486 TATCATCAATATGAACATTTTGTGTTATGTTTTACGTAACAGAAGTATTGAGACGTGTTT 216427 Query 40738 TTCGCTAAAAATCTCAATTTCGaaaaaaaTGGAGATACGAGGTTAACACAGAAATGGGAC 40797 ||| | ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 216426 TTCAGTGAAAATCTCATTTTCGAAAAAAATGGAGTTACGAGGTTAACACAGAAAGGGGAC 216367 Query 40798 GAATTG 40803 || ||| Sbjct 216366 GATTTG 216361 Score = 154 bits (170), Expect = 4e-33 Identities = 274/406 (67%), Gaps = 19/406 (5%) Strand=Plus/Minus Query 39301 TTCGTCCCGTTTCTGTGTAAACCTCGTATCTACAAAATCGTAATTTTCGGTAAATCGATA 39360 || ||||| ||||||||| ||||| ||||| ||||||| || |||||| |||| || Sbjct 228042 TTTGTCCCCTTTCTGTGTTAACCTAGTATCCACAAAATTGTCATTTTCCAAAAATTAATT 227983 Query 39361 AAAACGTTTAGAGTTACTTAATTTTTATAAAAAGTTATAACTAATTCAAAATTTATGCTC 39420 |||| ||| ||||||||| || |||||| | || |||||| || | ||| | || | Sbjct 227982 AAAATGTTCAGAGTTACTCAACTTTTATGATAAATTATAATCAAGTGTAAAATAATAGCC 227923 Query 39421 TTTATCAATCACCTTAAAAGAATTAAACATGATTTTTGCTATCTGCATCGATGCTTTGTT 39480 ||||| ||||| |||||||| | || | ||||||| | |||||| ||| ||| || Sbjct 227922 TTTATTCATCACTTTAAAAGACTCAACTACAATTTTTGATGTCTGCAACGAGACTTGATT 227863 Query 39481 GTTATTGTCAATTTCATGTAGATACGAGTTTTCTCATCAAACACCCTGGTGAtttttttt 39540 || | | ||||| ||| ||||||||||||| | | ||| | || | | ||||| Sbjct 227862 CTTTATATGAATTTTATGCAGATACGAGTTTTTGCGTTGAACTTTTTAGT-AATATTTTT 227804 Query 39541 GCAGATACGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNCTATAAGATCATTGGCGAAAA 39600 ||| ||||||||| | | | ||||||| |||||| Sbjct 227803 GCATATACGAGGTTTTAAATAAAAAAAAAAAA--------TTTTATATCATTGACGAAAA 227752 Query 39601 ATTCTGTTATGCAAGGCtttcaattcattattatt------ttatagttattaatttaaa 39654 | ||||||| || |||| | ||| ||||| ||||| ||||| ||| ||| Sbjct 227751 ----TCATATGCAAAACTCTCAAATAATTGTTATTTTATGATTATATTTATTCATTGAAA 227696 Query 39655 caaatttatttgattttgatttaatatgttataaatCATGTGATTA 39700 ||| ||| | ||||| | | || ||| |||||| ||| | |||| Sbjct 227695 CAATAGTATGTTATTTTAACTCAACATGGTATAAAACATTTAATTA 227650 >seq192 Length=145928 Score = 174 bits (192), Expect = 4e-39 Identities = 373/554 (67%), Gaps = 24/554 (4%) Strand=Plus/Plus Query 15058 TCAAACAGGAGATCCTGATATATTTGTCTTTTGTGCTCTTCTTTGGCTGAGATGTTGTAT 15117 ||||||| ||| ||| ||| | | | || | ||||||||| ||| |||||| Sbjct 1573 TCAAACAAGAGTGGCTGGTATTTGAGCCGCTTCTCCTCTTCTTTCACTGTAATGTTGCTC 1632 Query 15118 TCAGCCGGGGCCGAAAACTCTATGACATAAATG------TCACGAGTAGCCTTGTCGAAG 15171 |||||||| || || ||||| ||||||| ||| |||| | | |||||| Sbjct 1633 TCAGCCGGAGCTGAGAACTCAATGACATCGATGATTTTGTCACCAAAA------TCGAAG 1686 Query 15172 AGCACAATATCAGGTTTGTTGTGATCTATCCGCCGGGTTGTTGCAAATGGCATGTTCCAA 15231 || || || |||||||| | | | || | | | ||||| || | | |||||| Sbjct 1687 AGGACGATGTCAGGTTTCGTCGCAACGATTGGTCTGACAGTTGCGAACGAGAAGTTCCAG 1746 Query 15232 TAGATTTTGCAACTGTCATTCTCAACAACCCGGGGAATATCTCCTGGCAGATAAGGCAGC 15291 || || || || || || ||| ||||||| |||||||||||| |||||| ||| Sbjct 1747 TAAATCTTACACCTCTCGTTCACAACAACGGACTTAATATCTCCTGGAGCATAAGGTAGC 1806 Query 15292 ACTGGTGTCACGTCAATACCGTAGCAATGACGAAGATAATAGTACAGTACTCTCAGGGCA 15351 ||||| ||| ||| || || || || || || | || ||| ||||| ||||||| || Sbjct 1807 ACTGGCGTCCTGTCTATCCCATAACAGTGCCGCACATGATAATACAGGACTCTCAAAGCC 1866 Query 15352 GCATTATGACGCTGGATATATGCACCTCTCGCCAGCACA----GGGCATGCTGACAAAAG 15407 |||||||| || |||||||| || | | | ||| | || || || ||||| | Sbjct 1867 GCATTATGTCGATGGATATA---ACTTGT-GATGGCATACGTCGGACAAGCCGACAACAA 1922 Query 15408 GTGCATAAGCGTCTCCGGATGTTGTTTACACGCCCTGCAGGACGTGTCCGGAAGCTGCA- 15466 ||||| || || || || ||||| || |||| || |||||| | || |||| Sbjct 1923 ATGCATCAGAGTTTCAGGGGACTGTTTGCAAGCCCGACATCGCGTGTCTGTAACTTGCAA 1982 Query 15467 -CCTGGAGCACCTTGCTACGGTACTCTAGAGTGTTAATGACACCATCTTGGCAGGCAAAT 15525 || | || | | | || |||| |||| ||||||||||| || || || | Sbjct 1983 CCCCATAATACGAT--TTTGATAGACTAGGATGTTTATGACACCATCCTGACACGCGCAA 2040 Query 15526 ATGAACCCTTCAGTCTCGGACATCAGGCCAGCTGACTTTAAGAAGGAAAACGTCAGCTGG 15585 ||||| || |||||||| ||||||| | ||||||||| ||||| | || |||| ||| Sbjct 2041 ATGAAACCCTCAGTCTCTGACATCAAACTAGCTGACTTCAAGAAAGCGAAAGTCAACTGC 2100 Query 15586 GTGGACAAGCCATG 15599 ||| ||||| || Sbjct 2101 ACGGATAAGCCTTG 2114 >seq164 Length=204223 Score = 140 bits (154), Expect = 9e-29 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39303 CGTCCCGTTTCTGTGTAAACCTCGTATCTACAAAATCGTAATTTTCGGTAAATCGATAAA 39362 ||| || ||||||||| ||||| |||| |||||||| || |||||| ||||| || || Sbjct 109152 CGTGCCCTTTCTGTGTTAACCTAGTATATACAAAATTGTCATTTTCTAAAAATCAATTAA 109211 Query 39363 AACGTTTAGAGTTACTTAATTTTTATAAAAAGTTATAACTAATTCAAAATTTATGCTCTT 39422 || |||||||||||| || |||||| | || |||||| || | ||| | | ||| Sbjct 109212 AATATTTAGAGTTACTCAACTTTTATGATAAATTATAATCAAGTGTAAAATAGTAGCCTT 109271 Query 39423 TATCAATCACCTTAAAAGAATTAAACATGATTTTTGCTATCTGCATCGATGCTTTGTTGT 39482 ||| ||||| |||||||| | || ||||||| | || |||||||| ||| ||| Sbjct 109272 TATTGATCACTTTAAAAGACTCAACACCAATTTTTGATGTCGGCATCGATACTTGATTGC 109331 Query 39483 TATTGTCAATTTCATGTAGATACGAGTTTT 39512 | | | ||||| |||||||||||||| || Sbjct 109332 TTATATGAATTTTATGTAGATACGAGTCTT 109361 Score = 96.9 bits (106), Expect = 9e-16 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 40498 ATAAAAAATAGATGTCAATCAACAAAATATAGTCAACTTAAGTGTGAACACGTTTACAAA 40557 || ||||||| | |||| ||||||||||| || ||| || ||||| |||| ||||||||| Sbjct 112830 ATGAAAAATAAACGTCACTCAACAAAATACAGACAAATTTAGTGTCAACATGTTTACAAA 112889 Query 40558 CATTCAGTATTAAGACAACAACGCCATTTTAAC 40590 |||| |||| || || || |||||||| ||||| Sbjct 112890 CATTTAGTAATAGGAAAATAACGCCATCTTAAC 112922 >seq7 Length=2059422 Score = 120 bits (132), Expect = 8e-23 Identities = 259/380 (68%), Gaps = 12/380 (3%) Strand=Plus/Plus Query 15093 CTCTTCTTTGGCTGAGATGTTGTATTCAGCCGGGGCCGAAAACTCTATGACATAAATG-T 15151 ||||||||| ||| |||||| |||||||| || || ||||| |||||||| ||| | Sbjct 1938300 CTCTTCTTTCACTGTAATGTTGCTCTCAGCCGGAGCTGAGAACTCAATGACATAGATGAT 1938359 Query 15152 CACGAGTAGCCTTGTCGAAGAGCACAATATCAGGTTT-GTTGTGATCTATCCGCCGGGTT 15210 || | | |||||||| || || |||||||| || || | | || | | | Sbjct 1938360 TTCGTC-ATCAAAATCGAAGAGGACGATGTCAGGTTTCGTCGTAA-CGATTGGTCAGACA 1938417 Query 15211 GTTGCAAATGGCATGTTCCAATAGATTTTGCAACTGTCATTCTCAACAACCCGGGGAATA 15270 ||||| || | | ||| || || || || || || || ||| ||||||| |||| Sbjct 1938418 GTTGCGAACGAGAAGTTTCAGTAAATCTTACACCTCTCGTTCACAACAACGGACTCAATA 1938477 Query 15271 TCTCCTGGCAGATAAGGCAGCACTGGTGTCACGTCAATACCGTAGCAATGACGAAGATAA 15330 |||||||| |||||| || ||||| ||| ||| || || || | || || | || | Sbjct 1938478 TCTCCTGGAGCATAAGGTAGTACTGGCGTCGTGTCTATCCCATAAGAGTGCCGCAAATGA 1938537 Query 15331 TAGTACAGTACTCTCAGGGCAGCATTATGACGCTGGATATATGCACCTCTCGCCAGCACA 15390 || ||||| ||||||| || |||||||| || |||||||| || | | | ||| | Sbjct 1938538 TAATACAGCACTCTCAAAGCCGCATTATGTCGATGGATATA---ACTTGT-GATGGCATA 1938593 Query 15391 ----GGGCATGCTGACAAAAGGTGCATAAGCGTCTCCGGATGTTGTTTACACGCCCTGCA 15446 || || || ||||| | ||||| || || || || ||||| || |||| ||| Sbjct 1938594 CGTCGGACAAGCCGACAACAAATGCATCAGAGTTTCAGGGGACTGTTTGCAAGCCCGGCA 1938653 Query 15447 GGACGTGTCCGGAAGCTGCA 15466 |||||| | || |||| Sbjct 1938654 TCGCGTGTCTGTAACTTGCA 1938673 >seq58 Length=868450 Score = 109 bits (120), Expect = 1e-19 Identities = 264/392 (67%), Gaps = 12/392 (3%) Strand=Plus/Plus Query 14874 CCTAAGTAGACGGAGGGAACCTAGTAGCACAGCCTTCTGCATCCTGACTGCCAAGAACTC 14933 ||||||||| ||||| | || || | |||| ||| ||||||| | ||||| | | Sbjct 451345 CCTAAGTAGCCGGAGAAACCCAAGAATAACAGTCTTTTGCATCCACCCAGCCAATACTAC 451404 Query 14934 AGCTTTTGATGAGCAAGCTGGAACTCTGGCAAGTGAGGATACAAAAGACTGTTTCATCCC 14993 ||| ||| | |||| | | |||| | |||||||||||||| | ||| | Sbjct 451405 AGCATTTCGCCTATAGACTGGGATGATCTCAAGCGCAGATACAAAAGACTGATGCATGTC 451464 Query 14994 TCCAAGGACGCCAACAATCAGGACGACAAGCTTGACACGGTAACCTGGGTAAAGTTTGCC 15053 || || |||| ||||||||| | |||||||| | | |||| ||| |||| | Sbjct 451465 GCCGAGAGAACCAATAATCAGGACAATTAGCTTGACTCTG-AACC--GGTTCAGTTGACG 451521 Query 15054 AATTTCAAACAGGAGATCCTGATATATTTGTC-TTTTGTGCTCTTCTTTGGCTGAGATGT 15112 | |||||||||||| ||||| | ||| |||| | ||||||||| ||||| | | Sbjct 451522 TAGCTCAAACAGGAGAGGTTGATACTTGAGTCGTTTTTTCCTCTTCTTTTGCTGATACAT 451581 Query 15113 TGTATTCAGCCGGGGCCGAAAACTCTATGACATAAATGTCACGAGTAGCCTT---GTCGA 15169 || ||||| |||||||| || || |||||||| ||| | | || | || Sbjct 451582 TGCTCTCAGCTGGGGCCGACAAATCGATGACATAGATG---ATTTTTTCTTTAAAATTGA 451638 Query 15170 AGAGCACAATATCAGG-TTTGTTGTGATCTATCCGCCGGGTTGTTGCAAATGGCATGTTC 15228 |||| ||||||||||| ||||| | || | | | | | |||||||||| | |||| Sbjct 451639 AGAGGACAATATCAGGCTTTGTCGCAAT-GACGGGTCTGATAGTTGCAAATGAGAAGTTC 451697 Query 15229 CAATAGATTTTGCAACTGTCATTCTCAACAAC 15260 || || || || || | |||||| | |||| Sbjct 451698 CAGTAAATCTTACACCCCTCATTCCCCGCAAC 451729 >seq54 Length=895341 Score = 107 bits (118), Expect = 5e-19 Identities = 288/441 (65%), Gaps = 22/441 (5%) Strand=Plus/Minus Query 15165 GTCGAAGAGCACAATATCAGGTTTGTTGTGATCTATCCGCCGGGTTGTTGCAAATGGCAT 15224 || ||||| || ||||||||||| | | | | ||| | | || ||||| | || Sbjct 108449 GTTGAAGAAGACGATATCAGGTTTCGTCGCAGCGACGAGCCTGATCGTCGCAAACGACAA 108390 Query 15225 GTTCCAATAGATTTTGCAACTGTCATTCTCAACAACCCGGGGAATATCTCCTGGCAGATA 15284 |||||| || || || | || | |||| | || || |||||||||| | ||| Sbjct 108389 GTTCCAGTAAATCTTAGACCTCTAATTCACGACGACGAACTCAATATCTCCTAGAGCATA 108330 Query 15285 AGGCAGCACTGGTGTCACGTCAATACCGTAGCAATGACGAAGATAATAGTACAGTACTCT 15344 ||||| | || ||| || || || || |||| | |||| || |||| ||||| Sbjct 108329 AGGCAAAATCGGCGTCCGATCTATCCCATAAGAATGCGGCAGATGGTAATACAACACTCT 108270 Query 15345 CAGGGCAGCATTATGACGCTGGATATATGCACCTCTCGCCA--GCACA----GGGCATGC 15398 || || | || ||||| |||||||| |||| || ||| | || || | Sbjct 108269 CAAAGCCACGTTGTGACGGTGGATATA------ACTCGTCACTGCATATGTTGGACAAGT 108216 Query 15399 TGACAAAAGGTGCATAAGCGTCTCCGGATGTTGTTTACACGCCCTGCAGGACGTGTCCGG 15458 ||||||||| ||||| || || ||| | ||||| || ||| || ||||| Sbjct 108215 TGACAAAAGATGCATCAGAGTTTCCAGGAACTGTTTGCAAACCCGCCACCTAACATCCGG 108156 Query 15459 AAGCTGCACCTGGAGCACCTTGCTACGGTACTCTAGAGTGTTAATGACACCATCTTGGCA 15518 ||| |||| | | ||| ||| | || | || ||||| || |||| ||| || Sbjct 108155 AAGTTGCAACCCCATAACCCGGCTCCTATAAACCAGGGTGTTTATCACACTATCCTG--- 108099 Query 15519 GGCAAATATGAACCCTTCAGTCTCGGACATCAGGCCAGCTGACTTTAAGAAGGAAAACGT 15578 ||||| || || || |||||||| | |||||| ||||| || || ||| | || Sbjct 108098 -------ATGAAGCCCTCGGTTTCGGACATTAAGCCAGCCGACTTCAAAAATGAACAAGT 108046 Query 15579 CAGCTGGGTGGACAAGCCATG 15599 ||||||| |||||||||| || Sbjct 108045 CAGCTGGATGGACAAGCCCTG 108025 >seq13 Length=1681721 Score = 91.5 bits (100), Expect = 4e-14 Identities = 104/138 (75%), Gaps = 10/138 (7%) Strand=Plus/Minus Query 15058 TCAAACAGGAGATCCTGATATATTTGTCTTTTGTGCTCTTCTTTGGCTGAGATGTTGTAT 15117 |||||||||||| |||||| | | | |||| ||||||||| || || || ||| | Sbjct 856399 TCAAACAGGAGAGGTTGATATTTGAGCCGCTTGTCCTCTTCTTTTGCCGATATATTGCTT 856340 Query 15118 TCAGCCGGGGCCGAAAACTCTATGACATAAATGTCACGAGTAGCCTT----GTCGAAGAG 15173 | || ||| ||||||||||| |||||||| || |||| | ||| ||||||||| Sbjct 856339 TTAGTCGGAGCCGAAAACTCAATGACATAGAT-----GAGTTGTCTTCAAAGTCGAAGAG 856285 Query 15174 CACAATATCAGG-TTTGT 15190 ||||||||||| ||||| Sbjct 856284 GACAATATCAGGCTTTGT 856267 >seq28 Length=1311367 Score = 86.0 bits (94), Expect = 2e-12 Identities = 278/427 (65%), Gaps = 16/427 (4%) Strand=Plus/Plus Query 15165 GTCGAAGAGCACAATATCAGG-TTTGTTGTGATCTATCCGCCGGGTTGTTGCAAATGGCA 15223 ||||||||| || |||||||| |||||| | | | | ||| | | | ||||| | Sbjct 54894 GTCGAAGAGGACGATATCAGGCTTTGTTAT-ACCAACGGGCCTGATAATCGCAAACAAGA 54952 Query 15224 TGTTCCAATAGATTTTGCAACTGTCATTCTCAACAACCCGGGGAATATCTCCTGGCAGAT 15283 |||||| || || || || | |||||| | | ||| |||||||||||| || Sbjct 54953 AGTTCCAGTAAATCTTACATCCCTCATTCACGAGAACGGACTCAATATCTCCTGGAGCAT 55012 Query 15284 AAGGCAGCACTGGTGTCACGTCAATACCGTAGCAATGACGAAGATAATAGTACAGTACTC 15343 ||||||| | || | | | | | || || | | || |||| || |||| || Sbjct 55013 AAGGCAGAATCGGCGCCCAGCCTAAGCCATAAGAGTTCCGCAGATGGTAATACA--ACAT 55070 Query 15344 TCAGGGCAGCATTATGACGCTGGATATATGCACCTCTCGCCA--GCACA----GGGCATG 15397 ||| || | |||||||| ||| |||| |||| || ||| | || || | Sbjct 55071 TCAAAGCTGTGTTATGACGGTGGGTATA------ACTCGTCACTGCATATGTCGGACAAG 55124 Query 15398 CTGACAAAAGGTGCATAAGCGTCTCCGGATGTTGTTTACACGCCCTGCAGGACGTGTCCG 15457 | |||||||| || || || || ||||| ||||| || |||| || |||| Sbjct 55125 CCGACAAAAGATGGATCAGAGTTTCCGGGGACTGTTTGCAAGCCCGACACCTTACATCCG 55184 Query 15458 GAAGCTGCACCTGGAGCACCTTGCTACGGTACTCTAGAGTGTTAATGACACCATCTTGGC 15517 ||| |||| | | || | ||| | || | || | ||| || || ||||| |||| Sbjct 55185 GAACTTGCAACCCCATAACATGGCTCCTATAGACGAGGGCGTTTATCACGCCATCCTGGC 55244 Query 15518 AGGCAAATATGAACCCTTCAGTCTCGGACATCAGGCCAGCTGACTTTAAGAAGGAAAACG 15577 | || | ||||| || | | ||||| |||| | |||||||||| || || || || | Sbjct 55245 ACGCGCAAATGAAGCCCTTGGCTTCGGAGATCAAGTCAGCTGACTTCAAAAATGAGAAAG 55304 Query 15578 TCAGCTG 15584 ||||||| Sbjct 55305 TCAGCTG 55311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132910355380140