Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq35 93.3 5e-15 seq13 86.0 8e-13 seq54 84.2 3e-12 >seq35 Length=1220468 Score = 93.3 bits (102), Expect = 5e-15 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 16797 GAGAGACGTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGT 16856 |||| |||||| | || ||||| |||| ||||| ||| || | ||| | || ||||||| Sbjct 816858 GAGAAACGTTTCTCATGGGGTAAAAAAAGATGGAAAATTTGTAACCACAACAGAAGGGGT 816799 Query 16857 CAGGGTCAAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900 | |||| |||||| ||||||||||||||||||| | | ||| || Sbjct 816798 CGGGGTTAAAAGTAGTCGATTTGGCGTGGAATGTCTCATATATA 816755 Score = 93.3 bits (102), Expect = 5e-15 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 15292 TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGG 15351 ||| |||| | |||||||||||||||| || |||||| |||| |||||||| || | ||| Sbjct 816755 TATATATGAGACATTCCACGCCAAATCGACTACTTTTAACCCCGACCCCTTCTGTTGTGG 816814 Query 15352 CTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAACGTCTCTC 15395 | || ||| ||||| |||| ||||| || | |||||| |||| Sbjct 816815 TTACAAATTTTCCATCTTTTTTTACCCCATGAGAAACGTTTCTC 816858 >seq13 Length=1681721 Score = 86.0 bits (94), Expect = 8e-13 Identities = 81/102 (79%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 16802 ACGTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCA-AATCAAAAGGGGTCAGG 16860 ||||||| || || ||||||||||| | ||||||| ||||| || |||||||| Sbjct 983379 ACGTTTTCCATGGGATAGAAAAGGATAGAAAACTTTTAGCCAGAACCAAAAGGGAAT--- 983323 Query 16861 GTCAAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTATA 16902 |||||||||||||||||||| |||||| ||| ||| |||| Sbjct 983322 -TCAAAAGTGGTCGATTTGGCATGGAATACCCGATATATATA 983282 Score = 84.2 bits (92), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 15291 ATATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATT-T 15349 |||| ||| ||| |||||| |||||||| ||||||||||| |||||||| || | Sbjct 983283 ATATATATCGGGTATTCCATGCCAAATCGACCACTTTTGA----ATTCCCTTTTGGTTCT 983338 Query 15350 GGCTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAACGT 15390 |||| ||||||| | ||||||||||| || || ||||||| Sbjct 983339 GGCTAAAAGTTTTCTATCCTTTTCTATCCCATGGAAAACGT 983379 Score = 84.2 bits (92), Expect = 3e-12 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 15293 ATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGC 15352 || ||||||| || | | | |||||| ||||||||||| || ||||||||| ||| |||| Sbjct 1132289 ATGTATGGGGTATCCTATGACAAATCGACCACTTTTGAACCCGACCCCTTTCGATCTGGC 1132230 Query 15353 TGAAAGTTTACCATCCTTTTCTACCCTATCAAAAACGTCTCTCA 15396 | ||||||| | | | ||| ||| || || | ||| || ||||| Sbjct 1132229 TAAAAGTTTTCAACCTTTTCCTATCCCATGAGAAAAGTTTCTCA 1132186 Score = 84.2 bits (92), Expect = 3e-12 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16796 TGAGAGACGTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGG 16855 ||||| || ||| | || || ||| ||| | | | ||||||| ||||| ||| ||||||| Sbjct 1132186 TGAGAAACTTTTCTCATGGGATAGGAAAAGGTTGAAAACTTTTAGCCAGATCGAAAGGGG 1132245 Query 16856 TCAGGGTCAAAAGTGGTCGATTTGGCGTGGAATGCCCCCTA 16896 || || |||||||||||||||||| | | | || |||| || Sbjct 1132246 TCGGGTTCAAAAGTGGTCGATTTGTCATAGGATACCCCATA 1132286 >seq54 Length=895341 Score = 84.2 bits (92), Expect = 3e-12 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 16797 GAGAGACGTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGT 16856 |||| |||||| | ||| ||||||||||||| | ||| || || | ||| ||||||| Sbjct 121115 GAGAAACGTTTCTCATAAGGTAGAAAAGGATAGAAAATGTTTGGCAAGATCGAAAGGGGG 121174 Query 16857 CAGGGTCAAAAGTGGTCGATTTGGCGTGGAATGCCC 16892 | | | ||||| ||||||||||||||||||| ||| Sbjct 121175 CGGCTTTAAAAGCGGTCGATTTGGCGTGGAATACCC 121210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64511222751360