Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq192 154 1e-33 seq43 149 4e-32 seq156 129 4e-26 seq194 122 6e-24 seq6 120 2e-23 seq121 105 5e-19 seq25 104 2e-18 seq176 102 6e-18 seq312 98.7 7e-17 seq91 87.8 1e-13 >seq192 Length=145928 Score = 154 bits (170), Expect = 1e-33 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 11006 TTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAAC-CC 11064 ||| |||| | ||| |||||||||| |||||||| || | |||||||||| ||| || Sbjct 74602 TTCTGGCT-CATCGAGCAGAAAAATCGTATACACCTCTCGACCAGTAAAAAAAAAATGCC 74660 Query 11065 TCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAG 11124 ||||| ||||||||||||| ||||| ||||||||||||||| ||| | | || |||||| Sbjct 74661 TCAGATCACATGTTTGTCAGCCTCGGCTTCACCTCGGCCAAAAATTTCGTTTGGTCTGAG 74720 Query 11125 ACtttttttATTTTACTGGCCTAGGTATGTGATATACTATTT 11166 || || || ||||||| ||||| |||||| ||||||||||| Sbjct 74721 ACCGTTCTTTTTTTACTAGCCTAAGTATGTAATATACTATTT 74762 Score = 96.9 bits (106), Expect = 2e-16 Identities = 102/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 6714 TACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAA 6773 ||| |||| | |||| ||||| |||||||| || | | |||| || | |||| ||| Sbjct 74747 TACTTAGGCTAGTAAAAAAAGAACGGTCTCAGACCAAACGAAATTTTTGGCCGAGGTGAA 74688 Query 6774 GCCGAGGTCAACAAACATGTGGTCTGAGGC-TTTCTTATTTACTGTCCAAGATTTGTATG 6832 ||||||| ||||||||||| |||||||| ||| || ||||||| | ||| ||||| Sbjct 74687 GCCGAGGCTGACAAACATGTGATCTGAGGCATTTTTTTTTTACTGGTCGAGAGGTGTATA 74628 Query 6833 CGATTTTTCTTCT 6845 |||||||||| || Sbjct 74627 CGATTTTTCTGCT 74615 >seq43 Length=1079605 Score = 149 bits (164), Expect = 4e-32 Identities = 132/160 (83%), Gaps = 5/160 (3%) Strand=Plus/Plus Query 10994 GAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAA 11053 |||||| | | ||| |||| ||||| |||||||||| |||||||||||| ||| |||| Sbjct 27576 GAAATTACGATTTTCTGGCT-CGTCGAGCAGAAAAATTGTATACACACCTCAGCCGGTAA 27634 Query 11054 AAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACA 11113 ||| | ||| ||||| ||||||||||||| ||||| |||| ||||| | |||||| || Sbjct 27635 AAAAAATACC-TCAGATCACATGTTTGTCAGCCTCGGCTTCGCCTCGACTAACAATTTCA 27693 Query 11114 TGTGATCTGAGACtttttttATTTTACTGGCCTAGGTATG 11153 ||||||||||||| ||||| |||| || ||||||||||| Sbjct 27694 TGTGATCTGAGACATTTTT--TTTTCCT-GCCTAGGTATG 27730 Score = 102 bits (112), Expect = 6e-18 Identities = 104/132 (79%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 6714 TACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAA 6773 |||||||| || ||| || ||||||||||||||||||| ||||||| |||||||| Sbjct 27728 TACCTAGG-CAGGAAA--AAAAAATGTCTCAGATCACATGAAATTGTTAGTCGAGGCGAA 27672 Query 6774 GCCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGC 6833 ||||||| ||||||||||| ||||||| | | || ||||| | | || | ||||| | Sbjct 27671 GCCGAGGCTGACAAACATGTGATCTGAGG-TATTTTTTTTACCGGCTGAGGTGTGTATAC 27613 Query 6834 GATTTTTCTTCT 6845 |||||||| || Sbjct 27612 AATTTTTCTGCT 27601 Score = 80.6 bits (88), Expect = 2e-11 Identities = 90/117 (77%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 6716 CCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAGC 6775 ||| || || |||| ||| |||||||||||||||||| | ||||| || |||||||| Sbjct 639608 CCTCGGCCAGTAAA--AAGGAATGTCTCAGATCACATGAACTTGTTGGTTGTGGCGAAGC 639551 Query 6776 CGAGGTCAACAAACATGTGGTCTGAGGC-TTTCTTATTT-ACTGTCCAAGATTTGTA 6830 ||||| ||||||||||| | |||| |||||| ||| ||| || || | |||| Sbjct 639550 CGAGGCTGACAAACATGTGATTCCAGGCGTTTCTTCTTTCACTAGCCTAGGTATGTA 639494 Score = 80.6 bits (88), Expect = 2e-11 Identities = 89/117 (76%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 11035 TACACACCTTGGCCAGTAAAA--AGTAAACCCTCAGACCACATGTTTGTCAACCTCGACT 11092 |||| |||| ||| ||| ||| || || ||| | ||||||||||||| ||||| || Sbjct 639494 TACATACCTAGGCTAGTGAAAGAAGAAACGCCTGGAATCACATGTTTGTCAGCCTCGGCT 639553 Query 11093 TCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTGGCCTAGG 11149 || || | ||||||| ||||||||||||||| || | ||||||||||| ||| Sbjct 639554 TCGCCACAACCAACAAGTTCATGTGATCTGAGACATTCCT--TTTTACTGGCCGAGG 639608 >seq156 Length=204715 Score = 129 bits (142), Expect = 4e-26 Identities = 128/161 (80%), Gaps = 11/161 (7%) Strand=Plus/Plus Query 11006 TTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCT 11065 ||| |||| ||| | |||||||| | ||||||||| | |||||||||||| | |||| Sbjct 124560 TTCTGGCT-CGTAGAGCAGAAAA-TCGTATACACAGCGGGGCCAGTAAAAAAT---CCCT 124614 Query 11066 CAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGA 11125 ||| || ||||| |||| ||| ||||| | || | ||||||| |||||||||||||| Sbjct 124615 -AGATCATATGTTCGTCAGTCTCAACTTCGCTTCAGTCAACAATGTCATGTGATCTGAGA 124673 Query 11126 CtttttttATTTTACTGGCCTAGGTATGTGATATACTATTT 11166 |||| |||||||||||||||||||| || |||||||| Sbjct 124674 CTTT-----TTTTACTGGCCTAGGTATGTAATGTACTATTT 124709 >seq194 Length=136920 Score = 122 bits (134), Expect = 6e-24 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 11017 TCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACATG 11076 ||| |||||||||| | |||| | |||||| |||||| || ||| ||| ||||| Sbjct 12539 TCGAGCAGAAAAATCATCTACAGGCTATGGCCAATAAAAATAAATTCCTGAGATCACATT 12480 Query 11077 TTTGTCAACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATT 11136 | || ||| |||| |||| ||||||||||||| ||||| ||||||| | ||| || || Sbjct 12479 TATGCCAAACTCGGCTTCGTCTCGGCCAACAATGTCATGTAATCTGAGTCATTTCTTGTT 12420 Query 11137 TTACTGGCCTAGGTATGTGATATACTATTT 11166 ||||||| ||||||| | ||||||||||| Sbjct 12419 TTACTGGATTAGGTATTTAATATACTATTT 12390 >seq6 Length=2247010 Score = 120 bits (132), Expect = 2e-23 Identities = 133/174 (76%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 10994 GAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAA 11053 ||||||| | || |||| ||||| |||||||||| |||||||| || | ||||| | Sbjct 1636129 GAAATTGTGGCTATCTGGCT-CGTCGAGCAGAAAAATCGTATACAC--CTCGACCAGTGA 1636185 Query 11054 AAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACA 11113 ||| | ||||| |||||| ||||||||||||| |||| | || || |||||| || Sbjct 1636186 AAAAAGATGCCTCAAACCACAGGTTTGTCAACCTCAGCTTCGCATCCGCTAACAATTTCA 1636245 Query 11114 TGTGATCTGAGACtttttttATTTTACTGGCCTA--GGTATGTGATATACTATT 11165 ||||||||| ||| ||||| ||| ||||||||| | ||| | | ||||||| Sbjct 1636246 TGTGATCTGGGACATTTTTGTTTTAACTGGCCTATGGATATATAGTGTACTATT 1636299 Score = 93.3 bits (102), Expect = 3e-15 Identities = 123/169 (73%), Gaps = 14/169 (8%) Strand=Plus/Plus Query 10994 GAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAA 11053 |||||| | | ||| |||| ||||| | |||||||| | |||||||||| ||||||||| Sbjct 1884558 GAAATTACGATTTTCAGGCT-CGTCGAGTAGAAAAATTGAATACACACCTCGGCCAGTAA 1884616 Query 11054 AAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACA 11113 | | | |||||||| || |||||||||| |||| ||||||| || || Sbjct 1884617 AGAA-ACTCCCTCAGATCATATGTTTGTCAGCCTC-----------GGCCAACCATTTCA 1884664 Query 11114 TGTGATCTGAGACtttttttATTTTACTGGCCTAGGTATGTGATATACT 11162 ||| |||| || | ||| | || | |||| | || ||||| ||||||| Sbjct 1884665 TGTAATCTCAG-GTATTTCTCTTCTCCTGGTCGAGCTATGTAATATACT 1884712 Score = 89.7 bits (98), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 6735 AAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAGCCGAGGTCAACAAACATGTG 6794 ||||||| ||||||||||| ||||||| | || ||||||| ||||| |||||| |||| Sbjct 1636262 AAATGTCCCAGATCACATGAAATTGTTAGCGGATGCGAAGCTGAGGTTGACAAACCTGTG 1636203 Query 6795 GTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGCGATTTTTCTTCT 6845 || |||||| | || || |||| | || ||||| |||||||||| || Sbjct 1636202 GTTTGAGGCATCTTTTTTCACTGGTC--GAGGTGTATACGATTTTTCTGCT 1636154 >seq121 Length=318528 Score = 105 bits (116), Expect = 5e-19 Identities = 126/172 (73%), Gaps = 12/172 (7%) Strand=Plus/Plus Query 10995 AAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAAA 11054 ||||||||| ||| ||| ||||| |||||||||| |||| || || ||||||| || Sbjct 310872 AAATTGCCATTTTCTCGCT-CGTCGAGCAGAAAAATTGTATTAACGACTCGGCCAGTGAA 310930 Query 11055 AAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACAT 11114 || || |||||| | ||||| ||| | |||||||||| | ||| Sbjct 310931 AAAAAATGTCTCAGATTAGATGTTAGTC-----------CGCCTCGGCCAATAGAGTCAT 310979 Query 11115 GTGATCTGAGACtttttttATTTTACTGGCCTAGGTATGTGATATACTATTT 11166 ||||||||||| ||| || ||||| |||||||||||||| |||||||| || Sbjct 310980 ATGATCTGAGACATTTGTTTTTTTATTGGCCTAGGTATGTAATATACTAATT 311031 >seq25 Length=1373047 Score = 104 bits (114), Expect = 2e-18 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 11073 CATGTTTGTC--AACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttt 11130 |||||||||| | ||||||||| ||||||||||||| ||||||||||| || ||| Sbjct 675924 CATGTTTGTCTGAGTCTCGACTTCGTCTCGGCCAACAATTTCATGTGATCTGGCACATTT 675983 Query 11131 tttATTTTACTGGCCTAGGTATGTGATATACTATTT 11166 || |||||||||||||||||| |||||||||| || Sbjct 675984 CTTTTTTTACTGGCCTAGGTATTTGATATACTACTT 676019 >seq176 Length=174310 Score = 102 bits (112), Expect = 6e-18 Identities = 114/152 (75%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 11015 CGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACA 11074 |||| ||| |||||| |||||||||||| ||||| ||||| ||||||| ||| Sbjct 127998 CGTCAAGCACAAAAATCGTATACACACCTCGGCCAAGAAAAATG----CCTCAGATTACA 127943 Query 11075 TGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttA 11134 ||||| | | ||||| ||| || | || ||| |||||||||||||| || || Sbjct 127942 TGTTTATTAGCCTCGGCTTTGACTGGCGAAAAAATTTCATGTGATCTGAGATATTGCTTT 127883 Query 11135 TTTTACTGGCCTAGGTATGTGATATACTATTT 11166 ||| ||| |||||||| ||| ||||||||||| Sbjct 127882 TTTAACTAGCCTAGGTCTGTAATATACTATTT 127851 Score = 80.6 bits (88), Expect = 2e-11 Identities = 97/132 (73%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 ||||||| | | || ||| ||| |||||||||||||| |||| ||| || | ||| Sbjct 127867 ACCTAGGCTAGTTAAAAAAGCAATATCTCAGATCACATGAAATTTTTTCGCCAGTCAAAG 127926 Query 6775 CCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGCG 6834 |||||| || |||||||| |||||||| || ||| || || || | ||||| || Sbjct 127927 CCGAGGCTAATAAACATGTAATCTGAGGCATT----TTTCTTGGCCGAGGTGTGTATACG 127982 Query 6835 ATTTTTCTTCTT 6846 |||||| | ||| Sbjct 127983 ATTTTTGTGCTT 127994 >seq312 Length=55409 Score = 98.7 bits (108), Expect = 7e-17 Identities = 93/116 (80%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 10994 GAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAA 11053 |||||||| | ||| |||| ||||| || ||||||| ||| |||||| ||| ||||| Sbjct 11642 GAAATTGCGATTTTCTGGCT-CGTCGAGCCGAAAAATCGTAGCGACACCTCGGCTAGTAA 11584 Query 11054 AAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAAT 11109 ||| || ||||||| |||| ||||||| ||||| |||||||||||| |||||| Sbjct 11583 AAAA-AATGCCTCAGATTACATATTTGTCAGCCTCGGCTTCACCTCGGCTAACAAT 11529 >seq91 Length=489428 Score = 87.8 bits (96), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11095 ACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTGGCCTAGGTATGT 11154 ||||||||||||||| ||||||||||||||| ||| || |||||| |||||||||||| Sbjct 92483 ACCTCGGCCAACAATTCCATGTGATCTGAGACATTTCTTGTTTTACCAGCCTAGGTATGT 92542 Query 11155 GATATACT-ATTTAG 11168 |||| || |||||| Sbjct 92543 AATATCCTAATTTAG 92557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35679581741200