Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_006662.1 Length=17477 Score E Sequences producing significant alignments: (Bits) Value seq45 244 1e-60 seq122 179 4e-41 seq165 161 1e-35 seq54 138 1e-28 seq300 132 5e-27 seq71 127 2e-25 seq6 123 3e-24 seq8 91.5 2e-14 seq433 89.7 6e-14 seq150 89.7 6e-14 seq76 82.4 9e-12 seq22 82.4 9e-12 >seq45 Length=1006432 Score = 244 bits (270), Expect = 1e-60 Identities = 216/263 (82%), Gaps = 15/263 (6%) Strand=Plus/Minus Query 4751 AAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-AT 4809 |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| || || Sbjct 985640 AAATAGTATATTACACTACAAGGGCAGAAAGT-TGAATTTCCTGCACAGCGCGTGATGAT 985582 Query 4810 GCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869 |||||||||||||||||||||||||| | ||| |||||||| | |||| | |||||||| Sbjct 985581 GCCCGAGGCGAAGCCGAGGGCATCATAACGCGCTGTTCAGGGATTTCAACTATCTGCCCA 985522 Query 4870 TGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACG------TTAAAAAT-TGC 4922 |||||||||||||| ||||||| || |||||||||||||| || | || Sbjct 985521 TGTAGTGTATACTATTTTTCTTCATAGCCGGTCGAAAGTACGGACTGTTTGTTCGTATGT 985462 Query 4923 GTTGaaa--aaaaTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGC 4980 | |||| | |||| ||||| ||||||||||||| |||||||||||||||||||||| Sbjct 985461 ATCGAAAGGTATCTTGACGCCTG-CCCCGACATTTGCTGCACGAGCGAAGCGAGTGCTGC 985403 Query 4981 TGGTCggggggggCAGGCATCAA 5003 ||||| |||||||||| |||| Sbjct 985402 TGGTC---GGGGGCAGGCGTCAA 985383 >seq122 Length=326076 Score = 179 bits (198), Expect = 4e-41 Identities = 201/262 (77%), Gaps = 19/262 (7%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCATAT-G 4810 |||||||||| ||||||||||||||||| || ||| ||||||||||||||| ||| | Sbjct 258835 AATAGTATATCACACTACAAGGGCAGAACGT-TGAATTTCCTGCACTGCGCGTCATGCAG 258893 Query 4811 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCAT 4870 |||||||||||||||||| | ||||| ||| ||||||| | |||| | |||| | | Sbjct 258894 CCCGAGGCGAAGCCGAGG-CGTCATGATGCGCTGTTCAGGATTTTCAACTATCTGTTCTT 258952 Query 4871 GTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACG------TTAAAAAT-TGCG 4923 ||||||||||||| | ||||| || | | |||||||| | || || | ||| Sbjct 258953 GTAGTGTATACTATTGTTCTTCATACCCAGACGAAAGTATGGACTGCTTGCAAGTGTGCA 259012 Query 4924 TTGaa--aaaaaTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCT 4981 ||||| | | |||||||| ||||| |||||||| ||||||| |||| ||| ||||| Sbjct 259013 TTGAAAGATATATTGATGCTTGCCC----CATTTGCGACACGAGCAAAGCCAGTACTGCT 259068 Query 4982 GGTCggggggggCAGGCATCAA 5003 | | ||||||||||||||| Sbjct 259069 GCCC---GGGGGCAGGCATCAA 259087 >seq165 Length=192090 Score = 161 bits (178), Expect = 1e-35 Identities = 198/264 (75%), Gaps = 21/264 (8%) Strand=Plus/Plus Query 4750 GAAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-A 4808 |||||||| |||||||||||| ||||||||||| ||| |||||||| |||| ||| | Sbjct 169454 GAAATAGTGTATTACACTACACGGGCAGAAAGT-TGAATCTCCTGCACACCGCGTCATGA 169512 Query 4809 TGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCC 4868 ||||||||||||| | ||||| | ||| | |||||| | |||| | ||| ||| Sbjct 169513 TGCCCGAGGCGAAACA------ATCATAACGCGCTGGTCAGGGATTTCAACTATCTACCC 169566 Query 4869 ATGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTAC-----GTTAAAAATTGCG 4923 ||||||||||||| | ||||||| || ||||||||||||| ||| | || | Sbjct 169567 ATGTAGTGTATACCATTTTTCTTCATAGCCGGTCGAAAGTACAGACTGTTGATTCGTGTG 169626 Query 4924 --TTGaaa--aaaaTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTG 4979 | |||| | |||| ||||| ||||||||||| |||||| || ||| | ||||| Sbjct 169627 TATCGAAAGGTACCTTGACGCCTG-TGCCGACATTTGCTGCACGAACGGAGCAATTGCTG 169685 Query 4980 CTGGTCggggggggCAGGCATCAA 5003 |||||| |||||||||| |||| Sbjct 169686 CTGGTC---GGGGGCAGGCGTCAA 169706 >seq54 Length=895341 Score = 138 bits (152), Expect = 1e-28 Identities = 141/181 (78%), Gaps = 11/181 (6%) Strand=Plus/Plus Query 4815 AGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAG 4874 ||| |||| ||||||||||||| | ||| |||| ||| | |||||| || |||||||||| Sbjct 223234 AGGTGAAGTCGAGGGCATCATGACGCGCTGTTCCGGGATTTCAAATATCAGCCCATGTAG 223293 Query 4875 TGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACG-------TTAAAAATTGCGTTGa 4927 ||||||||| |||| || || ||| |||||||||| || || | || Sbjct 223294 TGTATACTA-TTTTTTTCATAGTCGGCCGAAAGTACGGACGGTTTTTCCGCGTGTATCGA 223352 Query 4928 aa--aaaaTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTC 4985 || | ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| Sbjct 223353 AAGGTATATTGATGCCTG-CCCCGACATTTGCTGCATGAGCGAAGCGAGTGCTGCTGGTC 223411 Query 4986 g 4986 | Sbjct 223412 G 223412 >seq300 Length=70609 Score = 132 bits (146), Expect = 5e-27 Identities = 129/164 (79%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 4749 AGAAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT- 4807 |||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| Sbjct 5641 AGAAATAGTATATTACACTACAAGGGCAGAAAGT-TGAATTTCCTGCATAGCGCGTCATG 5583 Query 4808 ATGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCC 4867 |||||||||| ||| | ||||| | ||| |||||| | | |||| | | |||| Sbjct 5582 ATGCCCGAGGTGAA------GTAATCATAACGCGCTGTTCAGAGATTTCAACTATTTGCC 5529 Query 4868 CATGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACG 4911 || |||||||| |||| || ||| || |||||||||||||| Sbjct 5528 CACGTAGTGTACACTATTTCCCTTCATAGCCGGTCGAAAGTACG 5485 >seq71 Length=708426 Score = 127 bits (140), Expect = 2e-25 Identities = 196/277 (71%), Gaps = 31/277 (11%) Strand=Plus/Minus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATG 4810 ||||||||||||||||| |||||||||||||| || |||| |||| ||||| || | | Sbjct 681723 AATAGTATATTACACTAGAAGGGCAGAAAGTC-GAATTTCCCGCACAGCGCGTGATGACG 681665 Query 4811 CCCGAGGCGAAGCCGAGG----------------GCATCATGGCACGCAGTTCAGGGCTC 4854 | || | | | | ||||||| | | | |||||| | | Sbjct 681664 CGCGTAGTGTAATATACTATTGTTAATTAATATCGCATCATAACGCACTGTTCAGCGGTT 681605 Query 4855 TCAAATTTCTGCCCATGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTACG--- 4911 | || | |||||||||||||||||||||| ||||||| || |||||||||||||| Sbjct 681604 TTAACTATCTGCCCATGTAGTGTATACTATTTTTCTTCATAGCCGGTCGAAAGTACGGAC 681545 Query 4912 ---TTAAAAAT-TGCGTTGaaaaaaaT--TGATGCCTGCCCCCGACATTTGCGGCACGAG 4965 || | || | |||| || ||| ||||||||| ||||||||| ||||||| Sbjct 681544 TGTTTGTTCGTGTGTATCGAAAGCTATCTTGACGCCTGCCCC-GACATTTGCTGCACGAG 681486 Query 4966 CGAAGCGAGTGCTGCTGGTCggggggggCAGGCATCA 5002 |||||||||||||||||| | |||||||||| ||| Sbjct 681485 CGAAGCGAGTGCTGCTGGCC---GGGGGCAGGCGTCA 681452 >seq6 Length=2247010 Score = 123 bits (136), Expect = 3e-24 Identities = 126/162 (78%), Gaps = 8/162 (5%) Strand=Plus/Plus Query 4749 AGAAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCATA 4808 || ||||||||||| ||||||||| ||||||||| ||| |||||| |||| ||||| Sbjct 2067895 AGGAATAGTATATTTCACTACAAGAGCAGAAAGT-TGAATCTCCTGCCCTGCATGCCAT- 2067952 Query 4809 TGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCC 4868 || ||| ||||||||||||||| || ||| |||||||| | |||| | |||| || Sbjct 2067953 -GCTCGA-----AGCCGAGGGCATCATTGCGCGCTGTTCAGGGATTTCAACTATCTGTCC 2068006 Query 4869 ATGTAGTGTATACTAGTTTTCTTACTATGCGGTCGAAAGTAC 4910 | | |||||||||| || |||| || |||||| |||||| Sbjct 2068007 GTATGGTGTATACTATTTCTCTTTATACCCGGTCGGAAGTAC 2068048 >seq8 Length=1915603 Score = 91.5 bits (100), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 4754 TAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-ATGCC 4812 ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| Sbjct 182424 TAGTATATTACACTACAAGGGCAGAAAGT-TGAATTTCCTGCACTGCGCGCCATGCTGCG 182366 Query 4813 CGAGGCGAAGCC 4824 ||||| |||||| Sbjct 182365 CGAGGAGAAGCC 182354 >seq433 Length=20622 Score = 89.7 bits (98), Expect = 6e-14 Identities = 70/81 (86%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 4751 AAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-AT 4809 || ||||||||||||| ||||||||||||||| ||| |||| |||| ||||| || || Sbjct 5487 AATTAGTATATTACACAACAAGGGCAGAAAGT-TGAATTTCCGGCACAGCGCGTGATGAT 5429 Query 4810 GCCCGAGGCGAAGCCGAGGGC 4830 || |||||||||||||||||| Sbjct 5428 GCTCGAGGCGAAGCCGAGGGC 5408 >seq150 Length=228345 Score = 89.7 bits (98), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 4750 GAAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT-A 4808 ||||||||||||||||||||| ||||||||||| ||| |||||||| ||||| ||| | Sbjct 221418 GAAATAGTATATTACACTACACGGGCAGAAAGT-TGAATCTCCTGCACAGCGCGTCATGA 221476 Query 4809 TGCCCGAGGCGAA 4821 ||||||||||||| Sbjct 221477 TGCCCGAGGCGAA 221489 >seq76 Length=671789 Score = 82.4 bits (90), Expect = 9e-12 Identities = 62/71 (87%), Gaps = 4/71 (6%) Strand=Plus/Minus Query 4933 aTTGATGCCTGCCCCCGACATTTGCGGCACGAGCGAAGCGAGTGCTGCTGGTCggggggg 4992 ||||||||||||||| ||||||||||||||||||||||| |||| |||||||| || Sbjct 545527 ATTGATGCCTGCCCC-GACATTTGCGGCACGAGCGAAGCTAGTGTTGCTGGTC---AGGA 545472 Query 4993 gCAGGCATCAA 5003 |||||| |||| Sbjct 545471 GCAGGCCTCAA 545461 >seq22 Length=1453673 Score = 82.4 bits (90), Expect = 9e-12 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 4825 GAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTAG 4884 || ||||||||||| ||| |||||||| | |||| ||||||| | ||||||||| || Sbjct 604985 GACGGCATCATGGCGCGCGGTTCAGGGATTTCAACGATCTGCCCGTATAGTGTATATTAT 604926 Query 4885 TTTTCTTACTATGCGGTCGAAAGTA 4909 ||||||| || |||||||||||| Sbjct 604925 TTTTCTTTATACCCGGTCGAAAGTA 604901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55807327618240