Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq112 140 3e-28 seq37 91.5 1e-13 >seq112 Length=360945 Score = 140 bits (154), Expect = 3e-28 Identities = 223/320 (70%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 71655 AATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCA 71714 |||||||| | || || || || || || |||||||| || ||| ||| | | Sbjct 302303 AATTCGAGACTTCCCAGACCCACGAGGACCTCTGGAATGCAGCCCAGAATCAGTTGGTGA 302244 Query 71715 ATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGA 71774 ||||| |||||||| |||| | | | ||||||||||| ||||| ||||||||||||| Sbjct 302243 GAGAGGGAAAAATTCATGGATTCATGAGGATGTACTGGGCTAAAAAAATTCTCGAGTGGA 302184 Query 71775 CTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCG 71834 | ||| || ||| | || || | | || || ||||| || || || ||||| | | Sbjct 302183 GCCGAACACCAGAGGATGCCCTAGCCTGGTCAATCTATCTCAATGACAGGTACAGCATGG 302124 Query 71835 ACGGTCGCGATCCTAACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATA 71894 | || | ||||| || |||||||| || || |||||| || || || |||||||| Sbjct 302123 ATGGAAGAGATCCCAATGGTTATGTTGGATGTATGTGGTCAATCTGTGGAATTCACGATC 302064 Query 71895 GAAGCTTTTTAGAACGTCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCG 71954 | | | ||| ||| | | ||||| |||||||| || ||||| || || || | Sbjct 302063 AAGGATGGAAAGAGCGTGAGATATTTGGAAAAATTCGTTACATGAACTACAAAGGATGTG 302004 Query 71955 AACGCAAGTTCAATGTGAAA 71974 || | || ||| |||||||| Sbjct 302003 AAAGAAAATTCGATGTGAAA 301984 >seq37 Length=1171872 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || ||||| || | ||||| ||| | || || | || | || || Sbjct 188891 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATTACACTGGAGGTTGAGGCATC 188950 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | || ||| |||||| || |||||||| || || || ||||| Sbjct 188951 TGACACCATCGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGTATCCCACCAGATCA 189010 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | | || | | ||| |||||| | || |||| |||| | ||| || || Sbjct 189011 ACAGCGTTTGATCTTTGCCGGTAAACAATTGGAGGATGGAAGAACTCTTTCCGATTACAA 189070 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| || |||| || || || | ||| ||||||| Sbjct 189071 TATTCAAAAAGAATCCACCCTCCACCTCGTTCTCCGTCTTCGAGGAGG 189118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || ||||| ||| | || ||||| |||||||| ||||| | ||| | Sbjct 189120 ATGCAGATATTCGTAAAGACACTTACAGGAAAGACGATCACCCTCGAAGTTGAAGCCTCT 189179 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||||| ||||||||||| || || || || || Sbjct 189180 GACACAATTGAAAATGTCAAAGCCAAGATACAGGACAAAGAAGGCATTCCACCAGACCAG 189239 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || || |||||| | || |||| |||| | ||||| || Sbjct 189240 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCGGACTACAAT 189299 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || ||||| || ||| ||||| |||| || | || || || |||| Sbjct 189300 ATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTCTCAGGGGTGGAA 189348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478656165422240