Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq109 168 2e-36 seq113 165 2e-35 seq47 84.2 6e-11 >seq109 Length=386716 Score = 168 bits (186), Expect = 2e-36 Identities = 503/768 (65%), Gaps = 20/768 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | ||||| | | | || | ||| ||| | ||||||||| Sbjct 264868 TTCACTCACGCATCACCAACCCTCTTCTCAGCCTGCACTTGTATACAACAGATGTCCAGC 264927 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || ||||||| ||||| || || |||||| || |||| ||||| || |||| Sbjct 264928 TGTTTCCTTCTAACAATGACTGAGGACAGCATCGATGGCATCTACGACACCCTCAAGAGG 264987 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| ||| | |||| || || || ||||| || | ||| | | | || Sbjct 264988 TGTGCACTTGTCAGCAAGTCAGCTGGTGGTATTGGAGTGAATGTTCACTGTATCAGAGCC 265047 Query 363727 CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | ||| || || | || || || |||||||| || ||||||||||| Sbjct 265048 AAGGGGACACGAATTGCTGGTACCAATGGTGTA-TCCAATGGGCTTGTACCCATGCTTCG 265106 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| | | || || || | ||||| || ||||||||| || || || || || Sbjct 265107 TGTTTACAATAACACAGCACGTTACGTTGATCAGGGTGGAAACAAACGTCCTGGCGCATT 265166 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| || ||||||||||| || || || || ||||| |||| || ||| ||| || Sbjct 265167 TGCCATTTATCTCGAGCCCTGGCACGCTGACATCTTTGATGTTCTCGATCTCAAGAAGAA 265226 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 ||| ||||| ||||||| | || ||||| |||||||| ||||| ||| || |||| | Sbjct 265227 CACAGGAAAGGAGGAATATAGAGCGCGTGAGCTGTTCTACGCACTCTGGATTCCTGATCT 265286 Query 363966 TTTTATGAAGCG---CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 || ||||| || | ||| || |||| | ||| || | ||||| ||||| || Sbjct 265287 ATTCATGAAACGAGTCCTGGCGGATGGTATG---TGGAGTCTGATGTGCCCCCACGAGTG 265343 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 |||||| |||| || |||||||| || | || ||| |||| ||| || || Sbjct 265344 TCCAGGCCTTTGTGACTCTTGGGGTGAAGAGTTTGAGAATCTCTACGTAAAATACGA--- 265400 Query 364083 GGAGGGAAAGGCTCGT---AA--GACA-ATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 | | | |||||||| || | || | || | | || ||| ||| || | Sbjct 265401 GAACG---AGGCTCGTTTCAAGCGTCAGGTGAAGGCTCGTGATCTCTGGACTGCAATTCT 265457 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 || || | ||||| || || ||||| ||| |||||||||| | |||||||| || Sbjct 265458 TATGTCACAAGTCGAGACTGGGACCCCCTACATGCTGTACAAAGACGCATGCAACCGGAA 265517 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGA 364256 ||||| ||| || || | || || || | |||||| | || || ||||| | || Sbjct 265518 ATCCAATCAGAAGAACTTGGGAACGATAAAATGCAGCAACTTGTGCACTGAGATCGTGGA 265577 Query 364257 ATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 ||| | ||||| || | ||| || || || | || ||||| || Sbjct 265578 GTACTCGAGCCCCGATGAAATTGCTGTTTGCAATTTGGCCTCGATTGC 265625 Score = 93.3 bits (102), Expect = 1e-13 Identities = 273/418 (65%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 || || |||| | ||||| ||| | || || ||||| || || || || || || Sbjct 266047 AAACACGGTATCAGGAACTCTCTCCTACTGGCACCAATGCCAACAGCCTCAACAGCCCAA 266106 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 || || || ||||||||| | |||| || | || |||||| | || || | || || Sbjct 266107 ATTCTTGGGAACAACGAGGCCATCGAGCCCTACACCAGCAATATCTACTCGAGACGTGTA 266166 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 | || || ||||| | ||| || ||| | || | ||||| || |||| ||| Sbjct 266167 TTGTCTGGTGAATTCCAGGTGGTCAATCCCCATCTCCTGAAGGACCTCACCGAGCGCAAC 266226 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 || |||| ||| |||| |||| || || || ||||| || | |||||||| Sbjct 266227 CTCTGGGACGACGAGATGAGGAACCTGATAATAGCGAACAATGGCTCGATCCAGAACATC 266286 Query 364960 C-CAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCG 365018 ||| || |||| ||| | ||| | | |||| ||| || ||||| ||| || | | Sbjct 266287 GACAGCATC-CCAGCAGACATCAAGGCACTGTACAGAACAGTCTGGGAGATTCCCCAGAG 266345 Query 365019 AACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAA 365078 | || | | ||||| || ||||| || || || ||| |||| |||||| | || Sbjct 266346 GATGATCCTCAAGATGGCAGCTGATCGTGGGGCCTTCATCGATCAGTCCCAGTCTCTCAA 266405 Query 365079 CGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGG 365136 || ||| | | ||||| | | || || || ||||||||||||| ||| ||| Sbjct 266406 TGTTCACATAGCAAATCCAACAACTGAAAAACTCACCTCCATGCATTTCTTCGGTTGG 266463 >seq113 Length=346302 Score = 165 bits (182), Expect = 2e-35 Identities = 1042/1647 (63%), Gaps = 68/1647 (4%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | ||||| | | | || | ||| ||| | ||||||||| Sbjct 257953 TTCACTCACGCATCACCAACCCTTTTCTCAGCCTGCACTGGTAGACAACAGATGTCCAGC 257894 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || ||||| || | ||||| ||||| ||| | || |||| ||||| || |||| Sbjct 257893 TGTTTTCTCCTGACAATGACTGACGACAGCATTAATGGCATCTACGACACCCTCAAGAGG 257834 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGT-TC-GTG 363724 ||||| || || ||| || || |||||||| || || ||| ||| || | | Sbjct 257833 TGTGCACTCATCAGCAAATCAGCTGGTGGAATTGGAGTGA--ATGTACACTGTATCAGAG 257776 Query 363725 CACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | || | ||| || || | || ||| || |||||||| || ||||||||| Sbjct 257775 CCAAGGGGACACGAATTGCTGGTACCAATGGTATA-TCCAATGGGCTTGTACCCATGCTT 257717 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 ||||| | | || || || | || || || ||||||||| || || || || Sbjct 257716 CGTGTTTACAATAACACAGCACGTTATGTTGATCAGGGTGGAAACAAACGTCCTGGAGCA 257657 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || ||||||||||| || || || || || || |||| || ||| |||| Sbjct 257656 TTTGCCATTTATCTCGAGCCCTGGCACGCTGACATATTCGATGTTCTCGATCTCAAGAAA 257597 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||||| ||||||||||||| || |||||||| || || || ||||| ||| | | || Sbjct 257596 AACACAGGAAAAGAGGAATATCGAGCACGTGAACTTTTTTACGCACTCTGGATCCCGGAT 257537 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCT--TTTGCCCACACGAAT 364021 || ||||| || || ||| | | || || | ||| | ||||| ||||||| Sbjct 257536 TTATTCATGAAACGTGTTCTGGC--GGACGATGTGTGGAGTCTGATGTGCCCCCACGAAT 257479 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGA 364079 ||||||| || | || |||||||| || | | |||||| || | |||| Sbjct 257478 GTCCAGGCCTATGTGACACCTGGGGTGAGGAATTCGAGAAGCTCTACAC--ACAGTA--- 257424 Query 364080 ATCGGAGGGAAAGGCTCGT---AA--GACA-ATTCCCGCACAGAAGCTATGGTTTGCCAT 364133 |||||| |||| ||| || | || | || | |||| ||| ||| || Sbjct 257423 ---CGAGGGAGAGGCCCGTTTCAAGCGTCAGGTGAAAGCTCGTGAGCTCTGGACTGCAAT 257367 Query 364134 CATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCG 364193 | || || | ||||| ||||| ||||| ||| ||||||| || | ||||| | Sbjct 257366 TCTTATGTCACAAGTCGAGACTGGAACTCCCTACATGCTGTACAAGGACGCATGCAATAG 257307 Query 364194 CAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTAT 364253 || ||||| ||| || || | || || || | |||||| | ||||| ||||| | Sbjct 257306 AAAATCCAATCAGAAGAACTTGGGAACGATAAAATGCAGCAACTTGTGTACTGAGATCGT 257247 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT------ 364307 || ||| | ||||| || ||| || || || | || ||||| || | Sbjct 257246 CGAGTACTCGAGCCCCGATGAAGTTGCTGTTTGCAATTTGGCCTCGATTGCAGTCAACAT 257187 Query 364308 -TCCG----GCGTTTGTAAAAGA--TGGTACTTTTGACCACCAGCATCTTTATGAC-GTA 364359 | || | || |||||| | ||||| || ||| | | ||| || Sbjct 257186 GTTCGTGGACCCAGTGAAAAAGACTTACAACTTT----AACAAGC----TGAAGACAGTC 257135 Query 364360 ACC--TATCAT-GCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATT 364416 | ||| | || | | |||||||||| |||||||| |||||||| |||| | Sbjct 257134 GTCAAAATCGTCGCAA---GAAATCTCGACAGAGTTATCGATGTCAATTATTACCCAA-T 257079 Query 364417 CCTGAAGCCGAGCGT-TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCT 364475 | | || | || || || || ||| | ||||| || || || |||| || ||||| || Sbjct 257078 CGAGGAGGCAAGAGTCTCCAACATGAGACATCGTCCCATGGGAATTGGAGTTCAGGGTCT 257019 Query 364476 CGCTGA--CGTTTTTA-TGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCT 364532 || || | ||| || |||||| | |||| || ||| || | || Sbjct 257018 GGCAGATGCATTTCTACTGATGCGTTA---TCCATTCGACAGCAATGAGGCCCAGAAACT 256962 Query 364533 AAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGC 364592 |||| ||||||| || || |||||| || || | || || || || | || Sbjct 256961 CAATATCCAGATCTTCGAGACCCTGTATTATGGTGCCCTCGAGGCCTCATGCGAGCTCGC 256902 Query 364593 AAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCA 364652 | ||||| | ||| || || | || || || | ||||| | |||| Sbjct 256901 CCAGGAGAAGGGCACCTACGAGACGTACAAAGGCTCACCAGTCAGCCAGGGCATCCTCCA 256842 Query 364653 GTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGAT--ACGCTACGTTCC 364710 || ||| | ||| ||| || ||| | | ||| |||||| | || | | | | Sbjct 256841 GTATGACATGTGGGGTGTAACACCAACAAATCTCTGGGACTGGGCTGAACTCAAGGAT-- 256784 Query 364711 AACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCT 364770 || | || || |||| | | ||||| ||| | || || ||||| || || || Sbjct 256783 AAAATATCTAAACACGGTATTAGGAACTCTCTCCTACTGGCACCAATGCCAACAGCCTCA 256724 Query 364771 ACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCA 364830 || || || || || || ||||||||| | | || || | || ||||| | || | Sbjct 256723 ACAGCCCAAATTCTGGGTAACAACGAGGCCATTGAGCCTTACACCAGCAACATCTACGCG 256664 Query 364831 CGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCC 364890 | || || || || || ||||| | ||||| ||| | || | ||||| || || Sbjct 256663 AGGCGTGTACTGTCTGGTGAATTCCAAGTAGTCAATCCCCATCTGCTGAAGGACCTCACC 256604 Query 364891 GACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTG 364950 || || | || |||| ||| |||||||||| | || || || ||||| || | Sbjct 256603 GAGCGTGATCTCTGGGACGACGACATGAAGAACCAGATAATAGCGAGCAATGGCTCGATC 256544 Query 364951 CAGAACATTCCAGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAAT 365009 ||||||| || | | | |||| ||| || ||| | | |||| ||| || |||||||| Sbjct 256543 CAGAACA-TCGACAACATCCCAGCAGACCTCAAGGCACTGTACAGAACAGTCTGGGAAAT 256485 Query 365010 TTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCA 365069 | || | | | || | | ||||| || ||||| || || || ||| ||| ||| Sbjct 256484 TCCCCAGAGGATGATCCTCAAGATGGCTGCTGATCGTGGGGCCTTCATCGACCAGTCCCA 256425 Query 365070 GTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTA 365129 ||| || || ||| | | ||||| ||| ||||| |||||||||||||||| Sbjct 256424 GTCCACCAATGTTCATATGGCAAATCCAACTCCCGAGAAGCTCACATCCATGCATTTCTT 256365 Query 365130 CGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| ||| | || || || ||||| || Sbjct 256364 CGGATGGGAGTCTGGCCTGAAGACTGG 256338 >seq47 Length=978588 Score = 84.2 bits (92), Expect = 6e-11 Identities = 88/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATT 22541 ||||| ||| | | ||||| ||||||| |||||||| |||||||||||||| || || Sbjct 561743 TTCGCTGAAAGAGTGATTGCCTTTGCTGCTGTTGAAGGGATTTTCTTTTCTGGTAG--TT 561800 Query 22542 TTG-TGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTT 22592 | | ||| || || ||||| |||||||||| | ||||| ||||| ||||| Sbjct 561801 TCGCTGCGATATTCTGGCTGAAAAAACGTGGGCTCATGCCTGGTCTTACGTT 561852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303336199414844