Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq19 181 7e-41 seq303 125 5e-24 seq217 122 6e-23 seq17 109 4e-19 seq37 93.3 3e-14 seq7 82.4 5e-11 >seq19 Length=1567206 Score = 181 bits (200), Expect = 7e-41 Identities = 277/392 (71%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| | ||| ||||| ||||| || ||| || || ||||| || || || ||||| Sbjct 1418816 ATGGGAAGCCTAAACGTGAATCGCAACGTGAGTGATGCATTCTATCGTTATAAGATGCCT 1418875 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 || || || || || |||||||| ||||| || || ||||| || |||||||||||| Sbjct 1418876 CGTATACAGGCTAAAGTTGAGGGTAAAGGAAATGGAATAAAAACAGTTATTGTCAACATG 1418935 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 || || || ||||| | || | || || ||||| ||||| |||| ||| || || Sbjct 1418936 GTGGACGTGGCAAAGGCTATTGGCAGGCCCGCAACCTATCCGACCAAATTTTTTGGATGT 1418995 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 ||| | ||||| || |||| || ||| ||| || || || ||||| || || ||||| Sbjct 1418996 GAATTGGGCGCACAAACGCTATTCGATTTCAAGAATGAACGTTTCATTGTCAATGGATCA 1419055 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 ||| | | | || || ||||| || | || || || || | |||| || ||||| Sbjct 1419056 CATGAGGCAACTAAACTACAGGATTTGTTGGATGGTTTCATAAGAAAGTACGTTTTGTGT 1419115 Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTTATTGT--GT-CTACCAAGAGAAACACCATC 6518 | | || ||||| || ||||| ||||| | || || ||| ||| || |||||| Sbjct 1419116 CCAGCGTGTGATAATCCAGAGACTGAGCTGCTGGTCAGTGCTAAGAAGGGA---ACCATC 1419172 Query 6519 TCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550 |||||||||||||| || || || | ||||| Sbjct 1419173 TCTCAGGGCTGCAAGGCATGTGGCCATCATGG 1419204 >seq303 Length=60023 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7256 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 7197 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 7196 GGTCATATTTAGCCTTA 7180 >seq217 Length=121070 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 74302 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 74361 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||| ||| Sbjct 74362 GGTCATATTTAGCATTA 74378 >seq17 Length=1605837 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || |||||| || ||||| |||||||| | | ||| |||| || Sbjct 84239 ACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGTCCGTCCTCC 84298 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| || || || | | || || || | ||| | || || |||||| Sbjct 84299 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84358 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| || |||| | |||||| | ||||| |||| || || || || Sbjct 84359 ATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACCTCTAGGGTGATGGTCTTG 84418 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||||| |||||||||||||||||||| ||| Sbjct 84419 CCCGTCAGTGTTTTCACGAATATCTGCATTTTT 84451 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || |||||| || |||||||||||||| | | ||| |||| || Sbjct 83783 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83842 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| || || || | | || || || | ||| | || || |||||| Sbjct 83843 AGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 83902 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| || |||| | ||| ||| || || || | ||||| ||||| Sbjct 83903 ATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 83962 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | || || ||||| ||||||||| Sbjct 83963 CCTGTGAGAGTCTTGACGAAGATCTGCATG 83992 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| |||||| || || ||||||||||| | || | || || Sbjct 84011 ACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGACCATCTTCC 84070 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| ||||| || || || | | || || || | ||| | || || |||||| Sbjct 84071 AATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84130 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | || || ||| || || || | ||||| ||||| Sbjct 84131 ATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 84190 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | ||| || ||||| ||||||||| Sbjct 84191 CCTGTGAGGGTCTTGACGAAGATCTGCATG 84220 >seq37 Length=1171872 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || ||||||||||||||||| || | | | | | || || |||||||| |||||||| Sbjct 189082 TCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAG 189023 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | || |||||||| | |||| |||||||| || ||| || || ||||| Sbjct 189022 ATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCTTTAACATTT 188963 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || || ||||| || | |||||| ||||| || |||| || || ||| Sbjct 188962 TCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACG 188903 Query 38307 AATATCTGCAT 38317 ||||| ||||| Sbjct 188902 AATATTTGCAT 188892 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||||| |||||||| ||||||||||||||||||| Sbjct 188894 CATT-CCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAAT 188836 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | | || || |||||||| || || || || || ||||| || || | Sbjct 188835 CTGAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTG 188776 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | || ||||||||| || || ||| ||||| | | || || | | Sbjct 188775 GAGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCT 188716 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || ||||| || |||| || || |||||||| ||||| Sbjct 188715 CGACCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188664 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| || | ||| | |||||||| |||||| ||| || || |||||||| | Sbjct 189350 CATT-CCACCCCTGAGACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGT 189292 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | | || || |||||||| || || || || | || || || || | Sbjct 189291 CCGAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTG 189232 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||||||| || || || ||||| | | || || || Sbjct 189231 GTGGAATGCCTTCTTTGTCCTGTATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTT 189172 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||| | || || || || || || | || || ||||||||||||||| Sbjct 189171 CAACTTCGAGGGTGATCGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCATG 189119 >seq7 Length=2059422 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 ||||||| || ||||||||||| | | ||| | || || | |||||| || || || | Sbjct 739752 CCTTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAA 739811 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | | || ||||| || | || | || ||||| ||| ||| || || ||||| | Sbjct 739812 TCAATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTGACATTTT 739871 Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307 || ||||| | ||||| || | || ||||| || |||||||| || || |||| Sbjct 739872 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACGA 739931 Query 38308 ATATCTGCAT 38317 | |||||||| Sbjct 739932 AAATCTGCAT 739941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942946379902