Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq37 156 4e-33 seq7 102 7e-17 seq17 98.7 9e-16 >seq37 Length=1171872 Score = 156 bits (172), Expect = 4e-33 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| ||||||||| |||| || ||| |||| ||| | || || ||| | || Sbjct 188891 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATTACACTGGAGGTTGAGGCATC 188950 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| ||||| | || |||| || | ||| || |||||||| || ||||| || Sbjct 188951 TGACACCATCGAA--AATGTTAAAGCTAAGATTCAA-GATAAAGAAGGTATCCCACCAGA 189007 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || |||||||| |||||||| || |||| | ||| | |||||| Sbjct 189008 TCAACAGCGTTTGATCTTTGCCGGTAAACAATTGGAGGATGGAAGAACTCTTTCCGATTA 189067 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||||||| || || | || || | || ||||||| Sbjct 189068 CAATATTCAAAAAGAATCCACCCTCCACCTCGTTCTCCGTCTTCGAGGAGG 189118 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| ||||||||| |||| || ||| ||||||| | || || ||| | || Sbjct 188663 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTC 188722 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || | ||| || ||| |||||||| || ||||| || ||||| Sbjct 188723 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 188782 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||| || || || |||||||| || |||| | ||| | |||||||| Sbjct 188783 GCAACGTCTTATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAA 188842 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| ||||| || || || || || ||| | || | || |||| Sbjct 188843 TATTCAAAAGGAATCTACTCTTCACTTGGTCCTACGTCTTCGTGGTGGAA 188892 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| |||||||| | || || || | ||||| ||||||| || | ||| Sbjct 189120 ATGCAGATATTCGTAAAGACACTTACAGGAAAGACGATCACCCTCGAAGTTGAAGCCTCT 189179 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | || ||||||||||| |||||||| || Sbjct 189180 GACACAATTGAAAATGTCA---AAGCCAAGATACAG-GACAAAGAAGGCATTCCACCAGA 189235 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || || |||||||| || |||| | ||| | || || Sbjct 189236 CCAGCAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCGGACTA 189295 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| || ||||| ||||| || ||||| || || | || || || |||| Sbjct 189296 CAATATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTCTCAGGGGTGGAA 189348 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| |||| || || |||||||| | ||||| ||| | || Sbjct 189347 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACACTTGAAGTAGAGGCCTC 189406 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| || | ||| || ||| || || || || || || ||||| || Sbjct 189407 TGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCA 189466 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || |||||| | || |||| | ||| | || ||||| Sbjct 189467 GCAACGTTTGATCTTCGCTGGTAAACAACTGGAGGATGGCAGAACTCTCTCAGACTACAA 189526 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||||||||||| || || || || || || | || ||||| ||| Sbjct 189527 CATTCAAAAAGAATCGACCCTTCACTTGGTTCTTCGTCTCAGAGGTGGA 189575 >seq7 Length=2059422 Score = 102 bits (112), Expect = 7e-17 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || ||||||||||| || || | ||||| | || || ||| | Sbjct 739944 ACAATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATCACCCTTGAGGTTGAGCCT 739885 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||||| || ||||| |||| |||| || | ||| || ||||| || ||||| || Sbjct 739884 TCTGATACCATCGAAAATGTCA---AAGCCAAGATTCAG-GATAAAGAGGGAATTCCTCC 739829 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||||||||| | ||||| || || |||||| | || |||| || ||| | || Sbjct 739828 AGACCAACAGCGATTGATTTTCGCTGGGAAACAACTCGAGGATGGGCGTACTCTCTCTGA 739769 Query 25172 TTACAATATTCAAAA 25186 |||||| || ||||| Sbjct 739768 TTACAACATCCAAAA 739754 >seq17 Length=1605837 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || ||| |||| || | || || ||| |||| Sbjct 83991 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCA 83932 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| |||||| ||||| || || ||||| || ||||| Sbjct 83931 GACACTATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 83872 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | ||||| || || ||||| | || || | |||||| | ||||||||| Sbjct 83871 CAGAGATTGATTTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTACAAT 83812 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||||| || || Sbjct 83811 ATCCAGAAGGAGTCTACCCTTCATTTGGTCCT 83780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433322497005230