Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq47 141 1e-28 seq159 113 5e-20 seq35 113 5e-20 seq104 105 7e-18 >seq47 Length=978588 Score = 141 bits (156), Expect = 1e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || |||||||| || |||||||| || ||||| | ||| |||||||||| ||| Sbjct 561228 ATGTAAGTTTCGATTAAAAGTGAATACATCTCCGAATGTATATTTTCCATTGCAACTTGA 561169 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||||||||| ||||| |||| || ||||||||| |||| || || ||| Sbjct 561168 AACCCGTAGAAACATCTTGCTTCAGTGACTTGGACTTCTTGACTGAATCGTTCCACTAGA 561109 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || || ||||| ||||| || ||||| || | | || || || || Sbjct 561108 TTCTCATTCACAATTCCATCTGATGCAGCGAAAAACGCTAGAACGTGGGAAATGAAGTGC 561049 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTT 93582 ||||| || || || || ||||||| | ||||| || Sbjct 561048 CGCTCATTGTCATTTAGTTTTACCCAATCCGCCAGATCCTT 561008 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 ||||| | ||| ||||| || || ||||| || || ||||| ||||||||||| | | | Sbjct 560495 TTTGATAAATCAACTTCCTCCACTGTCCAGAATGAAGCTTCAGCTTTTTTGTAGAACTGC 560436 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || || ||| | ||| |||||| ||||| || || | | || || ||||| |||| Sbjct 560435 CAAATATCTGGCCATTCAATTGGGAATATAACGAATCTACGGGGATTTTCTTTAAGTAGA 560376 Query 93701 GGCTCTAGTTGTGGGTCAAA 93720 ||||| ||||| | ||||| Sbjct 560375 GGCTCCAGTTGGGAATCAAA 560356 >seq159 Length=190880 Score = 113 bits (124), Expect = 5e-20 Identities = 86/100 (86%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| | |||||||||| Sbjct 53519 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGCATGGGAGCGTGG 53460 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATTGGAAttttt 126366 ||||||||||||||| | ||| || || | ||||||| Sbjct 53459 GTTCGAACCCCACACTTAGCAATTTTTTTT---AATTTTT 53423 >seq35 Length=1220468 Score = 113 bits (124), Expect = 5e-20 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| Sbjct 1123101 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTATGGGAGCGTGG 1123160 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||||| || || Sbjct 1123161 GTTCGAACCCCACACTTAGCAAATTTTTTTT 1123191 >seq104 Length=382730 Score = 105 bits (116), Expect = 7e-18 Identities = 70/77 (91%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||| Sbjct 342550 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATATGGGAGCGTGG 342609 Query 126327 GTTCGAACCCCACACCT 126343 ||||||||||||||||| Sbjct 342610 GTTCGAACCCCACACCT 342626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853546888080