Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq17 188 1e-42 seq425 159 6e-34 seq37 158 2e-33 seq7 140 6e-28 >seq17 Length=1605837 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || ||||| || |||||||| ||||| ||| Sbjct 83993 CCTCCACGAAGTCGAAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGAG 84052 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| || ||||| || ||||| || | ||| || ||||| || ||| Sbjct 84053 AGTGTGCGACCATCTTCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGA 84112 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || || |||||||| ||||||||||||| | || || Sbjct 84113 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACC 84172 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| |||||||| || ||||||||||||||||| |||||||| Sbjct 84173 TCAAGGGTAATGGTTTTCCCTGTGAGGGTCTTGACGAAGATCTGCAT 84219 Score = 172 bits (190), Expect = 1e-37 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 68224 GATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGT 68283 ||||||| || || || || || | || ||||| || ||||| || || ||||||| Sbjct 82941 GATTTTAGAGGCCCCCACGGAGACGGAGGACTAAGTGAAGAGTGGATTCCTTCTGGATGT 83000 Query 68284 TATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTT 68343 | ||||| |||||||| | || || || | ||| || || ||||| || | ||| || | Sbjct 83001 TGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCT 83060 Query 68344 GGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTG 68403 |||| || ||||| || |||||||| || || || ||||||||| ||||||||||||| Sbjct 83061 GGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTG 83120 Query 68404 CTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || | |||||||||||| || ||||| ||||||||||| |||||||| Sbjct 83121 AAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 83178 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| || ||||| || || |||||||| ||||| |||||||| | || || || Sbjct 83327 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCC 83386 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || ||||| || | ||| || ||||| || ||||| || |||||||| || Sbjct 83387 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 83446 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || ||||||||| ||||||||||||| | || || || | |||||||||||| Sbjct 83447 ATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTC 83506 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||||||||| |||||||| Sbjct 83507 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83535 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | |||||||| || || ||||| || |||||||| ||||| || Sbjct 83537 CCTCCACGAAGTCGAAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGAA 83596 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || || ||||| || | ||| || ||||| || ||| Sbjct 83597 AGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGA 83656 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| || || || |||||||| ||||||||||||| | || || Sbjct 83657 ATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACC 83716 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| || ||||||||||||||||| |||||||| Sbjct 83717 TCAAGGGTGATGGTTTTCCCTGTGAGGGTCTTGACGAAGATCTGCAT 83763 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 83765 CCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAA 83824 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || || ||||| || | ||| || ||||| || ||| Sbjct 83825 AGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGA 83884 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || || ||||||||| ||| || ||||||| | || || Sbjct 83885 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACC 83944 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| |||||||| || ||||| ||||||||||| |||||||| Sbjct 83945 TCAAGGGTAATGGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || ||||| || ||||| |||||||| || Sbjct 84221 CCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAA 84280 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || || ||||| || | ||| || ||||| || ||| Sbjct 84281 AGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGA 84340 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || || ||||||||| ||| || || || | | || || Sbjct 84341 ATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACC 84400 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||||||| || ||||| || || || ||||||||||||||| Sbjct 84401 TCTAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCATT 84448 >seq425 Length=33725 Score = 159 bits (176), Expect = 6e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 || ||||||||| || || || || || || ||||| ||||| ||||| || | ||||| Sbjct 29709 CAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCATC 29768 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | |||||| || ||||| || || || |||||||| || ||||| || |||||||| Sbjct 29769 TTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCCTCCTTGTC 29828 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || || || || ||||| ||||| ||||| | | ||||| || | ||||||||| Sbjct 29829 CTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACCTCGAGGGTGATGGT 29888 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| ||||| || || || |||||||| Sbjct 29889 TTTCCCCGTTAGGGTTTTAACAAAGATCTGCAT 29921 >seq37 Length=1171872 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| || | |||||||| || || || || ||||| || || ||||| | Sbjct 188892 TTCCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTG 188833 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || ||||| || || || || || ||||| || || | ||| ||||| || | Sbjct 188832 AAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAG 188773 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || || ||||| || ||||| |||||||| || |||||||| | | || | Sbjct 188772 GAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGA 188713 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||| |||||||||||| || || || ||||| |||||||| |||||| Sbjct 188712 CCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188663 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | || | ||| || ||||| |||||||| || || |||||||| Sbjct 189118 CCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCGGAA 189059 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || || || || ||||| || || | | ||||| || ||||| Sbjct 189058 AGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 188999 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || ||||||||||| || || || ||||||||||| | || || || Sbjct 188998 ATACCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCAACC 188939 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || |||||||| || || || ||||| |||||||| |||||| Sbjct 188938 TCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188891 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||||||||| ||||| || || || || || || || ||||| || Sbjct 189328 ACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAAAGAGTTCTTCCATCCTCC 189269 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || || || ||||| || | | || ||||| |||||||||||||| ||||| || Sbjct 189268 AATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGT 189209 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| || ||||| || || ||||| | | ||| ||||| | |||||| || ||| Sbjct 189208 ATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGATCGTCTTT 189149 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| |||||||||||||| Sbjct 189148 CCTGTAAGTGTCTTTACGAATATCTGCAT 189120 >seq7 Length=2059422 Score = 140 bits (154), Expect = 6e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| ||||| ||||| || | |||||| || | || ||||| ||||| || Sbjct 739754 TTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAATC 739813 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || |||||||| || ||||| || || || || |||||||| || ||||| ||| Sbjct 739814 AATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTGACATTTTCG 739873 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||||| || | | || || || | |||||| || |||||||| | ||||||||||| Sbjct 739874 ATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACGAAA 739933 Query 68454 ATCTGCATTATG 68465 ||||||||| || Sbjct 739934 ATCTGCATTGTG 739945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921610395868240