Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq37 131 1e-25 seq425 120 3e-22 seq7 100 2e-16 seq17 84.2 2e-11 >seq37 Length=1171872 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | |||||||| |||||||| |||||||| Sbjct 188893 ATTCCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCT 188834 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| || | ||||||||||||| |||| ||||| || ||||| ||| Sbjct 188833 GAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGA 188774 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| ||||| || | | ||||| |||||| | | ||| Sbjct 188773 GGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCG 188714 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| |||||||| ||||| || || ||||| Sbjct 188713 ACCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188664 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || || ||||| || || ||||| || | ||| | ||| || Sbjct 189329 AACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAAAGAGTTCTTCCATCCTC 189270 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||||||||||| |||| | |||||| ||||| || ||||||||||||||||| Sbjct 189269 CAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTG 189210 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||| | | ||||| ||||| | || ||| || || | ||| | ||| || Sbjct 189209 TATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGATCGTCTT 189150 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || || ||||| || ||||||||| || Sbjct 189149 TCCTGTAAGTGTCTTTACGAATATCTGCATGCCT 189116 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||||||||| ||||||||| | ||| | ||| || | ||||||||| Sbjct 189088 GTGGATTCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCG 189029 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | ||||||||| || || || || |||||||| || |||||| ||| Sbjct 189028 GCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCTTTA 188969 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| | | || || |||| || | |||||||| |||||||| Sbjct 188968 ACATTTTCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTC 188909 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || || ||||| Sbjct 188908 TTTACGAATATTTGCAT 188892 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || |||||||||||||||||||| || | ||| | ||| || Sbjct 189557 AACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAGAGAGTTCTGCCATCCTC 189498 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||||||||||||| |||| | ||| || || || ||||| ||||| || || || Sbjct 189497 CAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATGCCCTCCTTATCCTG 189438 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | ||||| || || | || || || || | || | || || Sbjct 189437 GATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACTTCAAGTGTGATGGTCTT 189378 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||| || |||||||||||||| Sbjct 189377 TCCAGTCAGAGTCTTGACAAAAATCTGCAT 189348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| || || | || ||||| ||||||||||||||||| Sbjct 188665 ATTCCACCACGAAGACGTAGAACCAAGTGAAGAGTCGATTCCTTTTGAATGTTGTAATCT 188606 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| ||||| || ||||||||| |||| ||||| || ||||| ||| Sbjct 188605 GAAAGAGTTCTGCCATCCTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGA 188546 Query 114273 GGAATGCCTTCTTTGTC 114289 ||||| || |||||||| Sbjct 188545 GGAATTCCCTCTTTGTC 188529 >seq425 Length=33725 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||||| ||||| || || || | || ||||| || |||||||||||||| Sbjct 29694 ACCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGA 29753 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || |||||| || || ||||||||| |||| || | ||||||||| || || Sbjct 29754 GAGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGG 29813 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| || || ||||| || || ||| | | ||| | ||||||| | || || Sbjct 29814 AATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTAC 29873 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | ||||| || || || ||||| ||||| ||||||||| Sbjct 29874 CTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCATG 29922 >seq7 Length=2059422 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 ||||| ||||||||||| | |||||| ||| || |||||||| |||||| | || Sbjct 739754 TTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAATC 739813 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 | ||||||||||| |||||||| || ||||| || |||||| ||| | | ||| Sbjct 739814 AATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTGACATTTTCG 739873 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||| || | | || || || | ||| | || || || |||| ||| || || ||| Sbjct 739874 ATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACGAAA 739933 Query 114375 ATCTGCAT 114382 |||||||| Sbjct 739934 ATCTGCAT 739941 >seq17 Length=1605837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| |||| | || || || | ||||| || || || ||||||||||| Sbjct 83534 ATGCCTCCACGAAGTCGAAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCA 83593 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || || || ||||| |||||| |||| | | ||| ||||| || Sbjct 83594 GAAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGG 83653 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| || || || | | ||| | |||||| | | ||| Sbjct 83654 GGAATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCG 83713 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | ||||| || || || || || || || ||||||||| || Sbjct 83714 ACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTCTTGACGAAGATCTGCATGCCT 83767 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| |||| | || ||||| | || || || || || ||||||||||| Sbjct 83990 ATGCCTCCACGAAGTCGAAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCA 84049 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||| | ||| || |||||| |||| | | ||| ||||| || Sbjct 84050 GAGAGTGTGCGACCATCTTCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGG 84109 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| || || || | | ||| | |||||| | | ||| Sbjct 84110 GGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCG 84169 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | ||||| || || || || || || || ||||||||| || Sbjct 84170 ACCTCAAGGGTAATGGTTTTCCCTGTGAGGGTCTTGACGAAGATCTGCATGCCT 84223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420129064555704