Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq109 205 2e-47 seq113 196 9e-45 >seq109 Length=386716 Score = 205 bits (226), Expect = 2e-47 Identities = 839/1305 (64%), Gaps = 41/1305 (3%) Strand=Plus/Minus Query 243878 TTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCC 243937 ||||| |||||| ||| |||| ||||| | | || || || ||||| ||| || | Sbjct 266405 TTGAGAGACTGGGACTGATCGATGAAGGCCCCACGATCAGCTGCCATCTTGAGGATCATC 266346 Query 243938 TTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCG 243997 |||| | ||||| | | || |||| | | ||||| || | |||| | ||| Sbjct 266345 CTCTGGGGAATCTCCCAGACTGTTCTGTACAGTGCCTTGATGTCTGCTGGGATGCTGTCG 266286 Query 243998 ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGG 244057 |||||||| | |||||| |||| | || | | || | | ||| | |||| ||| ||| Sbjct 266285 ATGTTCTGGATCGAGCCATTGTTCGCTATTATCAGGTTCCTCATCTCGTCGTCCCAGAGG 266226 Query 244058 CCCAAGCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGAC 244114 |||||| || ||| | || || || |||||||| || || || ||| Sbjct 266225 TT---GCGCTCGGTGAGGTCCTTCAGGAGATGGGGATTGACCACCTGGAATTCACCAGAC 266169 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGT 244174 | || || | | ||||| |||||| || ||||||||| ||| |||| || || Sbjct 266168 AATACACGTCTCGAGTAGATATTGCTGGTGTAGGGCTCGATGGCCTCGTTGTTCCCAAGA 266109 Query 244175 ATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGC 244234 || || || || || || ||||| || | || || ||| |||||| | ||||| Sbjct 266108 ATTTGGGCTGTTGAGGCTGTTGGCATTGGTGCCAGTAGGAGAGAGTTCCTGATACCGTG- 266050 Query 244235 CTCTGGATGCGGAGTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTT 244292 | |||| || |||| | ||||||||| |||| | | | ||| Sbjct 266049 -TTTGGAAATTTTATCCTTGAGTTTAGCCCAGTCCCA-------GAGATTTGTTGGTGTT 265998 Query 244293 TGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCG 244352 | ||||||||||| |||| || | |||| |||||| || ||| | ||| ||| Sbjct 265997 ACA--CCCCACATGTCGTACTGGAGGATGCCCTGGCTGACTGGTGAGCCTTTGTACGTCT 265940 Query 244353 GGTAGG-GACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATG 244411 ||||| | || || | |||||| |||| || | ||||| || |||| || | | Sbjct 265939 CGTAGGTGCCCTTCTC-CTGGGCGAGCTCGCATGAGGCCTCGAGTGCACCGTAATACAGG 265881 Query 244412 GTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATC 244471 |||||||||||| | || | | |||| | ||| | ||| || | |||| Sbjct 265880 GTCTCGAAGATCTGGATATTGAGTTTCTGGGCGTCATCGCTGTCGAATGGATAACGCATC 265821 Query 244472 ATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531 | | || | || ||||| ||||| || || || || ||||| | ||||| | |||| Sbjct 265820 AGTAGAAATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGGTGTCTCACGTTG 265761 Query 244532 GAGCGCATGGCTTCGGGCACG-GGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCG 244590 ||| | || | | || | |||||| ||| |||||||||| ||| |||||| | Sbjct 265760 GAGACTTTTGCCT-GCTCAAGTGGGTAATGATTGACGTCGATCACTCTGTCGAGGTTTCT 265702 Query 244591 GGTGATCATGCGGACGAC-GTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGG 244649 ||| | | |||||| ||| | ||| || ||||||||| || | || Sbjct 265701 GGTAACAACTTTGACGACTGTCTTC-AGCTTCTTAAAGTCGTA-----AGTTTTTTTCAC 265648 Query 244650 CGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCT 244709 | ||||| || ||| ||| | || | ||||| ||||| || || | | Sbjct 265647 TG-----GATCC--ACGAACATGTTAACTGCAATCGAGGCCAAATTGCAAACAGCAATTT 265595 Query 244710 CCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCA 244769 | || | | | | ||||| || ||||| ||||| | ||| ||||| || || || |||| Sbjct 265594 CATCGGGGCTCGAGTACTCCACGATCTCAGTGCACAAGTTGCTGCATTTTATCGTTCCCA 265535 Query 244770 GGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGG 244829 || || |||||||| || |||||| ||||| ||||| |||||| |||| ||| | Sbjct 265534 AGTTCTTCTGATTGGATTTCCGGTTGCATGCGTCTTTGTACAGCATGTAGGGGGTCCCAG 265475 Query 244830 TCTCGAGCTGGGCGACGAGGAC-GCTGTTCCAGAGGTCCCTAGCCTTGACC-GTCCTGCG 244887 |||||| || | | || | || || |||||| || | |||||| ||| | | | Sbjct 265474 TCTCGACTTGTGACATAAGAATTGCAGT-CCAGAGATCACGAGCCTTCACCTGACGCTTG 265416 Query 244888 AGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTC 244947 | | ||| || |||||| ||| || ||| ||||| ||||| || Sbjct 265415 AAACGAGCC-TCGTTCTCGTATTTTACGTAGAGATTCTCAAACTCTTCACCCCAAGAGTC 265357 Query 244948 GTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCT 245007 ||||| || ||| |||||||| ||||||||| || | || ||| | Sbjct 265356 ACAAAGGCCTGGACACTCGTGGGGGCACATCAGACTCCACATACCATCCGCCAGGACTCG 265297 Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 | |||||| || || || |||||||| || | ||| || || | | || | || || Sbjct 265296 TTTCATGAATAGATCAGGAATCCAGAGTGCGTAGAACAGCTCACGCGCTCTATATTCCTC 265237 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | || ||||||||| | || || | || ||||||| ||| ||||||||||||| | Sbjct 265236 CTTTCCTGTGTTCTTCTTGAGATCGAGAACATCAAAGATGTCAGCGTGCCAGGGCTCGAG 265177 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || | || | ||||| || || ||||| || ||||| || || Sbjct 265176 ATAAATGGCAAATGCGCCAGGACGTTTGTTTCCACCCTGATCAAC 265132 >seq113 Length=346302 Score = 196 bits (216), Expect = 9e-45 Identities = 840/1304 (64%), Gaps = 49/1304 (4%) Strand=Plus/Plus Query 243883 GGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTG 243942 ||||||| |||||||| ||||| | | || || || ||||| ||| || | |||| Sbjct 256421 GGACTGGGACTGGTCGATGAAGGCCCCACGATCAGCAGCCATCTTGAGGATCATCCTCTG 256480 Query 243943 AGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTT 244002 | || || | | || |||| | | |||||||| | |||| |||||||| Sbjct 256481 GGGAATTTCCCAGACTGTTCTGTACAGTGCCTTGAGGTCTGCTGGGATGTTGTCGATGTT 256540 Query 244003 CTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAA 244062 ||| | |||||| ||| | || | |||| | ||||| |||| ||| || | Sbjct 256541 CTGGATCGAGCCATTGCTCGCTATTATCTGGTTCTTCATGTCGTCGTCCCAGAGATCA-- 256598 Query 244063 GCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCAC 244119 ||||| || ||| | ||| || || || || || || || || ||||| || Sbjct 256599 -CGCTCGGTGAGGTCCTTCAGCAGATGGGGATTGACTACTTGGAATTCACCAGACAGTAC 256657 Query 244120 GCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTG 244179 || | | ||||| ||||||| || ||||| ||| ||| |||| ||||| || || Sbjct 256658 ACGCCTCGCGTAGATGTTGCTGGTGTAAGGCTCAATGGCCTCGTTGTTACCCAGAATTTG 256717 Query 244180 CGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTG 244239 || || || || ||||| || | || || ||| |||||| | ||||| | | Sbjct 256718 GGCTGTTGAGGCTGTTGGCATTGGTGCCAGTAGGAGAGAGTTCCTAATACCGTG--TTTA 256775 Query 244240 GATGCGGAGTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGG 244297 ||| || |||| || ||||||||| |||| | | | ||| | Sbjct 256776 GATATTTTATCCTTGAGTTCAGCCCAGTCCCA-------GAGATTTGTTGGTGTTACA-- 256826 Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 |||||||||||| |||| || | |||| |||||| || ||| | ||| ||| |||| Sbjct 256827 CCCCACATGTCATACTGGAGGATGCCCTGGCTGACTGGTGAGCCTTTGTACGTCTCGTAG 256886 Query 244358 G-GACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTC 244416 | | || || | |||||| |||| || | |||||||| | || || | |||||| Sbjct 256887 GTGCCCTTCTC-CTGGGCGAGCTCGCATGAGGCCTCGAGGGCACCATAATACAGGGTCTC 256945 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||||| | || | | |||||| || | ||| || | ||||| | Sbjct 256946 GAAGATCTGGATATTGAGTTTCTGGGCCTCATTGCTGTCGAATGGATAACGCATCAGTAG 257005 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG-C 244535 || | || ||||| ||||| || || || || ||||| | |||| | |||||||| | Sbjct 257006 AAATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGATGTCTCATGTTGGAGAC 257065 Query 244536 GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 | || || | | | |||||| | ||| | ||||| || ||| ||| || | | || Sbjct 257066 TCTTGCCTCCTCG-ATTGGGTAATAATTGACATCGATAACTCTGTCGAGATTTCTTGCGA 257124 Query 244596 TCATGCGGACGAC-GTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATG 244654 || |||||| ||| | ||| | ||||| ||| || || | | || Sbjct 257125 CGATTTTGACGACTGTCTTC-AGCTTGTTAAAGTTGTA-----AG---TCTTTTTCACTG 257175 Query 244655 GTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCC 244714 | ||| || ||| ||||| || | ||||| ||||| || || || || || Sbjct 257176 GG--TCC--ACGAACATGTTGACTGCAATCGAGGCCAAATTGCAAACAGCAACTTCATCG 257231 Query 244715 GAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGC 244774 | | | | ||||| ||| ||||| || || | ||| ||||| || || || |||| || | Sbjct 257232 GGGCTCGAGTACTCGACGATCTCAGTACACAAGTTGCTGCATTTTATCGTTCCCAAGTTC 257291 Query 244775 TGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 | |||||||| || ||||| ||||||||||| |||||| |||| || |||||| Sbjct 257292 TTCTGATTGGATTTTCTATTGCATGCGTCCTTGTACAGCATGTAGGGAGTTCCAGTCTCG 257351 Query 244835 AGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACC-GTCCTGCGAGCCT 244892 | || | | || | || | ||||||| || | ||| || ||| | | || | Sbjct 257352 ACTTGTGACATAAGAATTGCAG-TCCAGAGCTCACGAGCTTTCACCTGACGCTTGAAAC- 257409 Query 244893 TGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTA 244952 | ||||| ||||||| | ||||| || |||||| || |||||| || || Sbjct 257410 GGGCCTCTCCCTCGTACTGTGTGTAGAGCTTCTCGAATTCCTCACCCCAGGTGTCACATA 257469 Query 244953 GGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTG 245010 |||| || || || | |||||||| ||||||||| | || | || || | | Sbjct 257470 GGCCTGGACATTCGTGG--GGGCACATCAGACTCCACACATCGTCCGCCAGAACACGTTT 257527 Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC--TGCTCGTCC 245068 |||||| | || ||||||||||| || | || || || | || ||| | || || Sbjct 257528 CATGAATAAATCCGGGATCCAGAGTGCGTAAAAAAGTTCAC--GTGCTCGATATTCCTCT 257585 Query 245069 GAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATG 245128 || ||||| ||| | || || | || || || | ||| ||||||||||||| | Sbjct 257586 TTTCCTGTGTTTTTCTTGAGATCGAGAACATCGAATATGTCAGCGTGCCAGGGCTCGAGA 257645 Query 245129 TAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || | || | || || || || ||||| || ||||| || || Sbjct 257646 TAAATGGCAAATGCTCCAGGACGTTTGTTTCCACCCTGATCAAC 257689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944326899981920