Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq37 150 4e-31 seq17 140 8e-28 seq425 127 5e-24 seq7 123 6e-23 seq47 87.8 4e-12 >seq37 Length=1171872 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||| | ||| || | ||| | ||| ||||| |||||||| ||||| | Sbjct 189347 TCCACCCCTGAGACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGA 189288 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || |||||||| || |||||||||| |||||| || ||| Sbjct 189287 AAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGG 189228 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| ||||| || || ||||| || ||||| || | || | ||| || Sbjct 189227 AATGCCTTCTTTGTCCTGTATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAAC 189168 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| ||||||||||| || || || ||||| |||||||||||||| Sbjct 189167 TTCGAGGGTGATCGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||| | ||| || | |||| || ||||||||| || || ||||| | Sbjct 189575 TCCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGA 189516 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | || || || | |||||| || |||||||||| ||| || ||| | || Sbjct 189515 GAGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGG 189456 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || ||||||||||| || || || || ||||| |||| ||| | ||||| Sbjct 189455 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTAC 189396 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| ||||| || |||||||||||||| || ||||||||| Sbjct 189395 TTCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCATT 189347 Score = 138 bits (152), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || ||||| || | ||| ||||||||| ||||| || | Sbjct 189122 CATG-CCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAAT 189064 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || | ||| || || |||||||| || || ||||||| |||||||||| Sbjct 189063 CGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTG 189004 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| ||||||||||| || || || ||||| || ||||| || | || | | Sbjct 189003 GTGGGATACCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCT 188944 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || || || || || || || ||||||||||| |||||||| |||||| Sbjct 188943 CAACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188891 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | |||| || ||| ||||| ||||| || || | Sbjct 188891 TCCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGA 188832 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || |||||||| || |||||||| ||||| || || ||||| Sbjct 188831 AAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGG---TCTGG 188775 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||| |||||||| || || || || ||||| || | || | || Sbjct 188774 AGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTC 188715 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| || || || ||||||||||| |||||||| |||||| Sbjct 188714 GACCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188663 >seq17 Length=1605837 Score = 140 bits (154), Expect = 8e-28 Identities = 174/236 (74%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || |||| ||| || | ||||| || || || ||||||||||| | Sbjct 84217 CATG-CCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTATAAT 84275 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||||||||| || | |||||||| |||||||||| | ||| || | Sbjct 84276 CAGAAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTG---GT 84332 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| ||||| || || ||||||||||| || || ||||| || |||| ||| | Sbjct 84333 CTGGGGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATAGTATCCGAAG 84392 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || ||||| ||||| || ||||| || || ||||||||||||||| Sbjct 84393 CCTCAACCTCTAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCATT 84448 Score = 129 bits (142), Expect = 1e-24 Identities = 184/255 (72%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 288222 ATGGGATATGATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCT 288281 || ||| |||| |||| || | | || || ||||| | || || | |||| ||| Sbjct 82929 ATTGGAAATGAGGATTT-TAGAGGCCC-CCACGGAGACGGAGGACTAAGTGAAGAGTGGA 82986 Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | ||| ||||||||||| || | |||||||| ||||| Sbjct 82987 TTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAA 83046 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| || |||||| || || || || ||||||||||| || || || Sbjct 83047 GATCAATCTCTGCTG---GTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTGAC 83103 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || | || || || || ||||| || ||||| || |||||||| Sbjct 83104 GTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTT 83163 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 83164 GACGAAGATCTGCAT 83178 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || |||| ||| || | ||||| || || || |||||||| || | Sbjct 83761 CATG-CCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAAT 83819 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||||||||| || | |||||||| ||||| |||| | ||| || | Sbjct 83820 CAGAAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAAATCAATCTCTGCTG---GT 83876 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| ||||| || || ||||||||||| || || ||||| || |||| || || Sbjct 83877 CTGGGGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATAGTGTCTGACG 83936 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || ||||| || |||||||||||||| |||||||| Sbjct 83937 CCTCGACCTCAAGGGTAATGGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 Score = 127 bits (140), Expect = 5e-24 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 288250 CCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGC 288309 || ||||| | || || | |||| ||| ||| || ||||| || || || | ||| Sbjct 83312 CCACGGAGACGGAGGACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGT 83371 Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG--- 288366 ||||||||||| || | |||||||| |||||||||| | ||| || |||||| Sbjct 83372 GTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTG---GTCTGGGGGA 83428 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||||||||| || || |||||||| || | || | || || Sbjct 83429 ATCCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACC 83488 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| || |||||||||||||| |||||||| Sbjct 83489 TCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 83535 Score = 123 bits (136), Expect = 6e-23 Identities = 170/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || |||| ||| || | ||||| || || || ||||| || || | Sbjct 83989 CATG-CCTCCACGAAGTCGAAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAAT 84047 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| || ||||| ||||| ||||| |||||||||| | ||| || | Sbjct 84048 CAGAGAGTGTGCGACCATCTTCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGG---T 84104 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| ||||| || || ||||||||||| || || || ||||| || | || || Sbjct 84105 CTGGGGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACATTTTCGATGGTGTCTGACG 84164 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || ||||| || || ||||||||||| |||||||| Sbjct 84165 CCTCGACCTCAAGGGTAATGGTTTTCCCTGTGAGGGTCTTGACGAAGATCTGCAT 84219 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || ||||||||||| || | |||||||| |||||| Sbjct 83573 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAG 83632 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || |||||| ||||| ||||| ||||||||||| || || || Sbjct 83633 ATCAATCTCTGCTG---GTCTGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCCTTGACA 83689 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || || || || || ||||| || ||||| || || |||||| Sbjct 83690 TTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTCTTG 83749 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 83750 ACGAAGATCTGCAT 83763 >seq425 Length=33725 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | ||| ||||| | |||| || ||| || || || || || || | | Sbjct 29695 CCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAG 29754 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| | || || || ||||||||||| | |||||| |||||| Sbjct 29755 AGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTG---GTCTGGG 29811 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||||||||| ||||| || ||||| || | ||| | ||| Sbjct 29812 GGAATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCT 29871 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||||| || || || || || || |||||||| Sbjct 29872 ACCTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCAT 29921 >seq7 Length=2059422 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || || || | ||| || || || || || | |||||| || ||||| ||| Sbjct 739754 TTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAATC 739813 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | |||||||| ||||| ||||| ||||||||||| || || ||||| || ||| Sbjct 739814 AATCGCTGTTGG---TCTGGAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTGACATTT 739870 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || || ||||| ||||| || |||| |||||||||| Sbjct 739871 TCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACG 739930 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 739931 AAAATCTGCATTGTG 739945 >seq47 Length=978588 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 269248 AATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAG 269307 ||||| |||| ||||||||||| ||||||||| ||||||||||| || |||||||| ||| Sbjct 564499 AATCCATTCGACTTTATGGAACAAATTTCGCTAGAAGGAAAGACTAATTTCTTCGAGAAG 564558 Query 269308 CGTGTCAGCGACTATCAA 269325 ||| |||| |||||| Sbjct 564559 AAAGTCGGCGAATATCAA 564576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179638650876476