Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq425 129 6e-25 seq17 111 2e-19 seq37 95.1 1e-14 seq2 87.8 2e-12 >seq425 Length=33725 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | ||| | || ||||| || | ||| ||||| ||||| |||||||||| Sbjct 29694 ACCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGA 29753 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||||||||||||||| || || | ||| ||||| | || Sbjct 29754 GAGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGG 29813 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| |||||| ||||| | | | |||||| | || || Sbjct 29814 AATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTAC 29873 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| ||||||||||| |||||||| || || |||||||| ||||| || Sbjct 29874 CTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCATGTT 29924 >seq17 Length=1605837 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || |||||| || ||||||||||||| ||||| || |||| || Sbjct 83783 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83842 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||| || |||||||| || | || ||||||||| | || | | |||||||||| | Sbjct 83843 AGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 83902 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| |||| || | | ||||| || || || || | || |||||||| Sbjct 83903 ATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 83962 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || ||||| ||||| Sbjct 83963 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||||| ||||| || |||| || ||||| || |||||||| Sbjct 83572 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAA 83631 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | || ||||||||| | || | | ||| |||||| |||||| |||| | Sbjct 83632 GATCAATCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATT 83691 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || || || || | ||||||||||| || || || ||||| || Sbjct 83692 TTCGATGGTGTCTGACGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTCTTGAC 83751 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 83752 GAAGATCTGCAT 83763 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||||| || || || |||| || ||||| || |||||||| Sbjct 82988 TCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAG 83047 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | || ||||||||| | || | | |||||||||| |||||| |||| | Sbjct 83048 ATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTT 83107 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | || || || | ||||||||||| || || || ||||| || Sbjct 83108 TCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACG 83167 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 83168 AAGATCTGCAT 83178 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||||| || || || |||| || ||||| || |||||||| Sbjct 83345 TCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAG 83404 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | || ||||||||| | || | | |||||||||| |||||| |||| | Sbjct 83405 ATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTT 83464 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | || || || | ||||||||||| || || || ||||| || Sbjct 83465 TCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACG 83524 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 83525 AAGATCTGCAT 83535 >seq37 Length=1171872 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||||||||||||||| | ||||| | | || || | || ||||||||||| Sbjct 188854 TCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAG 188795 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || || |||||||| | || | | ||| |||||| ||| || |||| | Sbjct 188794 ATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTT 188735 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | || || || | |||||||||||||| || || |||||||| Sbjct 188734 TCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACG 188675 Query 42198 AAGATTTGCATT 42209 || ||||||||| Sbjct 188674 AATATTTGCATT 188663 >seq2 Length=2705631 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||||||||||||||||||||||||| |||| Sbjct 1056129 AAAAAATCTCTCT--GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 1056072 Query 57058 -TCACCACTATACTACCGAGGATTGAA 57083 | |||||||||||||| ||||||| Sbjct 1056071 TTGACCACTATACTACCAGAGATTGAA 1056045 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| ||| | |||||||||| |||| |||||||||||||||| || | Sbjct 2304462 AAAAATTCTCTCC--GGCGGGGAATCGAACCCCGGTCGTCCGCGTGACAGGCGGAAATGC 2304405 Query 57058 TCACCACTATACTACCGAGGAT 57079 |||||||||||| ||||| ||| Sbjct 2304404 TCACCACTATACCACCGAAGAT 2304383 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| ||| | |||||||||| |||| |||||||||||||||| || | Sbjct 2304849 AAAAATTCTCTCC--GGCGGGGAATCGAACCCCGGTCGTCCGCGTGACAGGCGGAAATGC 2304792 Query 57058 TCACCACTATACTACCGAGGAT 57079 |||||||||||| ||||| ||| Sbjct 2304791 TCACCACTATACCACCGAAGAT 2304770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543205724653280