Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq109 174 2e-38 seq113 111 2e-19 seq425 105 7e-18 seq37 98.7 1e-15 seq7 96.9 3e-15 >seq109 Length=386716 Score = 174 bits (192), Expect = 2e-38 Identities = 362/535 (68%), Gaps = 8/535 (1%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| |||||||| |||||||| || | || ||| | ||| || || | |||| Sbjct 265619 GAGGCCAAATTGCAAACAGCAATTTCATCGGGGCTCGAGTACTCCACGATCTCAGTGCAC 265560 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || || |||||| || || |||| ||| |||||||| ||||| ||||||||||||| Sbjct 265559 AAGTTGCTGCATTTTATCGTTCCCAAGTTCTTCTGATTGGATTTCCGGTTGCATGCGTCT 265500 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 ||||||| ||||| ||||| || || || ||||| | || ||||| | ||| Sbjct 265499 TTGTACAGCATGTAGGGGGTCCCAGTCTCGACTTGTGACATAAGAATTGCAGTCCAGAGA 265440 Query 154767 CTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTT 154826 || |||| || |||| | || ||| ||| |||| |||| | |||| || || Sbjct 265439 TCACGAGCCTTCACCTGACGCTTGAAACGAGCCTCGTTCTCGTATTTTACGTAGAGATTC 265380 Query 154827 TCAAACTCTAAACTGTACACGTCCGACAAA--CCGGGACAGCGGTCGGGACACATCAATG 154884 ||||||||| || | ||| ||||| || ||||| || ||| ||||||| Sbjct 265379 TCAAACTCTTCACCCCAAGAGTC--ACAAAGGCCTGGACACTCGTGGGGGCACATCAGAC 265322 Query 154885 ACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACA 154944 |||||| | | | || |||||||| || | ||| || | ||| | ||||| | Sbjct 265321 TCCACATACCATCCGCCAGGACTCGTTTCATGAATAGATCAGGAATCCAGAGTGCGTAGA 265262 Query 154945 ACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCAT 155004 ||| |||||||| | | || || || |||| ||| | || | || |||| Sbjct 265261 ACAGCTCACGCGCTCTATATTCCTCCTTTCCTGTGTTCTTCTTGAGATCGAGAACATCAA 265202 Query 155005 ATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGT---TTTCCTC 155061 | ||||| |||||||| ||||| | ||| | ||| | ||||| ||| ||||| | Sbjct 265201 AGATGTCAGCGTGCCAGGGCTCGAGATAAATGGCAAATGCGCCAGGACGTTTGTTTCCAC 265142 Query 155062 CTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCC 155116 | ||||| |||| ||| | |||||||| || || || |||| | || ||| Sbjct 265141 CCTGATCAACGTAACGTGCTGTGTTATTGTAAACACG-AAGCATGGGTACAAGCC 265088 >seq113 Length=346302 Score = 111 bits (122), Expect = 2e-19 Identities = 349/535 (65%), Gaps = 8/535 (1%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| |||||||| |||| ||| || | || ||| | || || || | ||| Sbjct 257202 GAGGCCAAATTGCAAACAGCAACTTCATCGGGGCTCGAGTACTCGACGATCTCAGTACAC 257261 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || || |||||| || || |||| ||| |||||||| ||||| | ||||||||||| Sbjct 257262 AAGTTGCTGCATTTTATCGTTCCCAAGTTCTTCTGATTGGATTTTCTATTGCATGCGTCC 257321 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 ||||||| ||||| || || || || || ||||| | || ||| ||| |||| Sbjct 257322 TTGTACAGCATGTAGGGAGTTCCAGTCTCGACTTGTGACATAAGAAT--TGCAGTCCAGA 257379 Query 154767 -CT-TCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTT 154824 || || || | || |||| | || || || | ||| || ||| ||| || | Sbjct 257380 GCTCACGAGCTTTCACCTGACGCTTGAAACGGGCCTCTCCCTCGTACTGTGTGTAGAGCT 257439 Query 154825 TTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATG 154884 | || || || || | ||| | | || ||||| || ||| ||||||| Sbjct 257440 TCTCGAATTCCTCACCCCAGGTGTCACATAGGCCTGGACATTCGTGGGGGCACATCAGAC 257499 Query 154885 ACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACA 154944 ||||| |||| | || |||||||| || |||||||| | ||| | ||||| | Sbjct 257500 TCCACACATCGTCCGCCAGAACACGTTTCATGAATAAATCCGGGATCCAGAGTGCGTAAA 257559 Query 154945 ACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCAT 155004 | | ||||| || | || || || ||||| ||| | || | || ||| Sbjct 257560 AAAGTTCACGTGCTCGATATTCCTCTTTTCCTGTGTTTTTCTTGAGATCGAGAACATCGA 257619 Query 155005 ATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGT---TTTCCTC 155061 ||||||| |||||||| ||||| | ||| | ||| | || || ||| ||||| | Sbjct 257620 ATATGTCAGCGTGCCAGGGCTCGAGATAAATGGCAAATGCTCCAGGACGTTTGTTTCCAC 257679 Query 155062 CTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCC 155116 | ||||| || | ||| | |||||||| || || || |||| | || ||| Sbjct 257680 CCTGATCAACATAACGTGCTGTGTTATTGTAAACACG-AAGCATGGGTACAAGCC 257733 >seq425 Length=33725 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || ||||| || || | |||| || ||||| || |||||||||||||| | Sbjct 29694 ACCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGA 29753 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | ||||| |||||||| || || | || |||| ||| ||||| || || Sbjct 29754 GAGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGG 29813 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||| || || || || | |||| ||||| ||| || | ||| || || || | Sbjct 29814 AATTCCCTCCTTGTCCTGGA-TTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTA 29872 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | || | ||| || || || | ||||| || || || ||||| || Sbjct 29873 CCTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCATGTT 29924 >seq37 Length=1171872 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| |||||||| |||||||||| | || | | || || | || Sbjct 188866 TGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCCAATTGT 188807 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || || || |||||||| ||||||||||| ||||| || || || || Sbjct 188806 TTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTG 188747 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || ||| || || || || | || | ||| ||||| ||| Sbjct 188746 GCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTGCCAGTC 188687 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | ||| |||||||| ||||||||| Sbjct 188686 AGAGTCTTTACGAATATTTGCATT 188663 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||||||||||||||||||||| |||| || || | | || || || || Sbjct 189550 TGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAGAGAGTTCTGCCATCCTCCAGTTGT 189491 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || | || ||||| || ||||| || || || || || || || || Sbjct 189490 TTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCTTG 189431 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | |||||| ||| || ||||| | || | |||||| || ||| Sbjct 189430 GCCTTGACATTTTCAATAGTATCAGAGGCCTCTACTTCAAGTGTGATGGTCTTTCCAGTC 189371 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | ||| || || ||||| |||||| Sbjct 189370 AGAGTCTTGACAAAAATCTGCATT 189347 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| |||||||| ||||||||||||||||||| | || | | || ||||||||| Sbjct 188638 TGAAGAGTCGATTCCTTTTGAATGTTGTAATCTGAAAGAGTTCTGCCATCCTCAAGCTGC 188579 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || || || |||||||| ||||||||||| ||||| || || || || Sbjct 188578 TTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTG 188519 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398 ||| ||| || | |||||| || || ||||| Sbjct 188518 GCCTTGACATTTTCAATGGTATCAGAAGCCTCGACTTC 188481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| |||||||| | | || | | || || | || || ||| Sbjct 189088 GTGGATTCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCG 189029 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||| || || || || || |||||||| ||||| | | || ||||| Sbjct 189028 GCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTG-AATCTTAGCTTT 188970 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || ||| || || || || | || | ||| ||||| |||| ||| Sbjct 188969 AACATTTTCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTTGCCAGTCAGAGT 188910 Query 64426 TTTTACGAAAATTTGCATT 64444 |||||||| ||||||||| Sbjct 188909 CTTTACGAATATTTGCATT 188891 >seq7 Length=2059422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 ||||| ||||||||||| | || || ||| | || || || || || || || |||| Sbjct 739754 TTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAATC 739813 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 | ||||| ||||| ||||||||||| ||||| || || | | || ||||| ||| || Sbjct 739814 AATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATCCTG-AATCTTGGCTTTGACATTTTC 739872 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | |||||| | || || || | || | ||||| || |||||||| || ||||| Sbjct 739873 GATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACGAA 739932 Query 64435 AATTTGCATT 64444 ||| |||||| Sbjct 739933 AATCTGCATT 739942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499638292126480