Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_011588.1 Length=127615 Score E Sequences producing significant alignments: (Bits) Value seq26 140 3e-28 seq30 84.2 2e-11 >seq26 Length=1350929 Score = 140 bits (154), Expect = 3e-28 Identities = 224/322 (70%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 58793 ATTTTGAGAGTCGAAGCCGTTTATGTTGGTGAGCGTATCGTTCTTGACTTTGATGACTTT 58852 |||||| || || ||||| || || ||||| ||||||||| | || || | | ||||| Sbjct 654147 ATTTTGTGAATCAAAGCCATTCATATTGGTAAGCGTATCGATTTTTACATCAAATACTTT 654088 Query 58853 AATGTTCGTGTACGGGTGTAACGTGTGAACGATTAAATCGACGGGCGCTATAATCACTCC 58912 | | || ||||| || || | || |||| || |||||||| || ||||| | | | || Sbjct 654087 ATTATTGGTGTAAGGATGGAGTGTATGAATGACCAAATCGACTGGAGCTATGAGCTCGCC 654028 Query 58913 ATTCTCTCCGATGGCCAACTCGTTCGATATAAACATGTTGTACAATTGTCCGGAAATTAC 58972 |||| || ||||||||||| | ||| ||| ||||| || | |||||| || Sbjct 654027 ATTCGGACCAATGGCCAACTCATCTGATTTAAGCATGTCATAAATTTGTCCAGACGGCGT 653968 Query 58973 ACGAGCCACCAACGATACTTCGCTGTAGACAATTTGAGCGTGCACTTTTCGACCGTCTCT 59032 ||| | | | ||| |||| ||||| || ||||| || || ||||| || || || | Sbjct 653967 ACGTCCGAGGAGTGATGCTTCACTGTACACTATTTGCGCATGTACTTTACGTCCATCACG 653908 Query 59033 AGTAATACCCCAACAATTCCGCAAGTCGACAGCTTTCGATATAATATTTTTCTGCCCATA 59092 ||||||||||| ||||| |||||| | | || | |||||| || ||||| Sbjct 653907 CGTAATACCCCAGCAATTGGACAAGTCCGTGGTAATAGAGCATACATTTTTTTGTCCATA 653848 Query 59093 GGCGTTGGCGATTTTCGAACCG 59114 | || |||| ||| |||||| Sbjct 653847 GCTATTAGCGACTTTGGAACCG 653826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 40208 ATATGTTTTCATGTGTAATGTCGAAAGTTCAGATGTGGCATTGCTTTAATCACGCCGAAC 40267 |||| || ||||||| ||||| ||||| || |||||||||||||| || || | | Sbjct 649600 ATATATTCGCATGTGTCATGTCAAAAGTGCAAATGTGGCATTGCTTCGATGACAAACAGC 649541 Query 40268 CGTACATTTGGGCGTACAAATGGAACGGTATTAAAGCTAAAATG 40311 |||| |||||| ||||| ||||||||| | ||||| |||||| Sbjct 649540 TGTACCATTGGGCCTACAAGTGGAACGGTGTAAAAGCCAAAATG 649497 >seq30 Length=1304261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 32108 AAGCATGTTTCGAGAAATTGGTCTTTCAGCACTTGGACAGCAGGCGTCGTATTCGGCGCG 32167 || ||||| |||||| |||| || || || | | | ||||| || || | || | Sbjct 1060022 AAACATGTCTCGAGATATTGATCCTTTAGAATTCGTACAGCTGGGGTGTTGTTGCCTTCA 1060081 Query 32168 CATTTGATGCCACTTTCCGGATTTAAAATGTACAACTCCCCACGACATGCCCAAATGTAC 32227 || | ||| |||| | ||||| | || || | || |||||| ||||| |||||| Sbjct 1060082 CAATGGATTCCACCCTTGGGATTCACAACATAAAGTTCTCCACGAACAGCCCAGATGTAC 1060141 Query 32228 CAATCGAAGGGTGAAACGACGATGAACCTATTGCATATT-TCGTCGGTGGATTTATCGTA 32286 |||||||| ||| |||||| ||||| | || || ||| | | | || ||||||| || Sbjct 1060142 CAATCGAAAGGTAAAACGATAATGAAACGATCACACATTGTTGAC-GTTAATTTATCATA 1060200 Query 32287 GATTTTAAAAATAGTAGG 32304 |||||| |||| ||| || Sbjct 1060201 GATTTTCAAAACAGTGGG 1060218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408238015566512