Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq113 174 1e-38 seq109 174 1e-38 seq37 127 2e-24 seq425 87.8 2e-12 seq17 86.0 6e-12 >seq113 Length=346302 Score = 174 bits (192), Expect = 1e-38 Identities = 733/1142 (64%), Gaps = 43/1142 (4%) Strand=Plus/Minus Query 123225 GGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG- 123283 ||||| | | ||||||| || |||||||||||| | | || | || || ||||| || Sbjct 257734 GGGCTTGTACCCATGCTTCGTGTTTACAATAACACAGCACGTTATGTTGATCAGGGTGGA 257675 Query 123284 --CAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGAT 123341 |||||| || || | || || ||||| || || ||||||| ||| | | |||| Sbjct 257674 AACAAACGTCCTGGAGCATTTGCCATTTATCTCGAGCCCTGGCACGCTGACATATTCGAT 257615 Query 123342 TTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTAC 123401 || | || | || |||| || || ||| | ||| || || | || ||| Sbjct 257614 GTTCTCGATCTCAAGAAAAACACAGGAAAAGAGGAATATCGAGCACGTGAACTTTTTTAC 257555 Query 123402 GCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTC 123461 || | ||| | || ||||| || ||| ||| || | |||| |||||| || Sbjct 257554 GCACTCTGGATCCCGGATTTATTCATGAAACGTGTTCTGGCGGACGATGTGTGGAGTCTG 257495 Query 123462 ATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTG 123521 ||||| ||| | ||||| ||| | | ||| | || | | || || || | Sbjct 257494 ATGTGCCCCCACGAATGTCCAGGCCTATGTGACACCTGGGGTGAGGAATTCGAGAAGCTC 257435 Query 123522 TACGCGCAATACGAGCGCGAAGGCAAACAGGTTA----GTCAGGTTCCGGCACGTGA--T 123575 ||| | || |||||| | || ||| | | || ||||||| || ||||| | Sbjct 257434 TACACACAGTACGAGGGAGA-GGC---CCGTTTCAAGCGTCAGGTGAAAGCTCGTGAGCT 257379 Query 123576 TTG---TTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTAC 123632 || | ||| || |||| |||||||||| || ||||| || |||||||| ||| Sbjct 257378 CTGGACTGCAA--TTCTTATGT---CACAAGTCGAGACTGGAACTCCCTACATGCTGTAC 257324 Query 123633 AAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAAT 123692 || ||||| ||||| || ||| ||||||||| ||||||||||| |||||||| || || Sbjct 257323 AAGGACGCATGCAATAGAAAATCCAATCAGAAGAACTTGGGAACGATAAAATGCAGCAAC 257264 Query 123693 CTTTGCTCCGAAATTATCGAATACAGCGA-TGCCGATCAAGTGGCCGTGTGTAATTTGGC 123751 | || | || || |||| ||| ||| ||||| |||| || || || |||||||| Sbjct 257263 TTGTGTACTGAGATCGTCGAGTAC-TCGAGCCCCGATGAAGTTGCTGTTTGCAATTTGGC 257205 Query 123752 TTCGATTTGCGTGAA-----TCGTTG---CGTCGAAAACGGCGCTTTTAATTTCCAAACG 123803 |||||| || || |||| | | ||||| | ||| || || | | | Sbjct 257204 CTCGATTGCAGTCAACATGTTCGTGGACCCAGTGAAAAAG--ACTTACAACTTTAACAAG 257147 Query 123804 CTCAA-ACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTT 123862 || || || ||||| | || | || ||| | ||| | |||||||||| |||| Sbjct 257146 CTGAAGACAGTCGTCAAAATC-GTCGCAAGAAATCTCGACAGAGTTATCGATGTCAATTA 257088 Query 123863 TTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCAT 123922 ||| || | ||||| || | | || || ||| ||| | || | ||| | || | Sbjct 257087 TTACCCAATCGAGGAGGCAAGAGTCTCCAACATGAGACATCGTCCCATGGGAATTGGAGT 257028 Query 123923 TCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAA 123982 ||| || |||| || || ||| || || |||| || | ||| ||| | || || | Sbjct 257027 TCAGGGTCTGGCAGATGCATTTCTACTGATGCGTTATCCATTCGACAGCAATGAGGCCCA 256968 Query 123983 GTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGA 124042 | || |||| || || ||| || | ||||| || || | ||||| ||||| Sbjct 256967 GAAACTCAATATCCAGATCTTCGAGACCCTGTATTATGGTGCCCTCGAGGCCTCATGCGA 256908 Query 124043 ACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTAT 124102 || || | | ||| | ||||| | ||| ||| || | |||| || || Sbjct 256907 GCTCGCCCAGGAGAAGGGCACCTACGAGACGTACAAAGGCTCACCAGTCAGCCAGGGCAT 256848 Query 124103 TTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAA 124162 | ||||| ||||||||| || ||||| |||||| | ||||||||| || | || Sbjct 256847 CCTCCAGTATGACATGTGGGGTGTAACACCAACAAATCTCTGGGACTGG-GC---TGAAC 256792 Query 124163 ACAACG----CATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGA 124218 ||| | ||||| | |||||| | | ||||| || | |||| ||||| | Sbjct 256791 TCAAGGATAAAATATCTAAACACGGTATTAGGAACTCTCTCCTACTGGCACCAATGCCAA 256732 Query 124219 CGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATT 124278 | || | || || |||||| | || |||||||| || | ||||| | ||| | ||| Sbjct 256731 CAGCCTCAACAGCCCAAATTCTGGGTAACAACGAGGCCATTGAGCCTTACACCAGCAACA 256672 Query 124279 TGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACG 124338 | |||| | | || || | | || || || ||||| | |||| ||| || || | | Sbjct 256671 TCTACGCGAGGCGTGTACTGTCTGGTGAATTCCAAGTAGTCAATCCCCATCTGCTGAAGG 256612 Query 124339 AC 124340 || Sbjct 256611 AC 256610 >seq109 Length=386716 Score = 174 bits (192), Expect = 1e-38 Identities = 723/1125 (64%), Gaps = 43/1125 (4%) Strand=Plus/Plus Query 123225 GGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG- 123283 ||||| | | ||||||| || |||||||||||| | | || |||| || ||||| || Sbjct 265087 GGGCTTGTACCCATGCTTCGTGTTTACAATAACACAGCACGTTACGTTGATCAGGGTGGA 265146 Query 123284 --CAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGAT 123341 |||||| ||||| | || || ||||| || || ||||||| ||| | | ||| Sbjct 265147 AACAAACGTCCTGGCGCATTTGCCATTTATCTCGAGCCCTGGCACGCTGACATCTTTGAT 265206 Query 123342 TTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTAC 123401 || | || | || |||| || ||| ||| | | ||| || || |||| ||| Sbjct 265207 GTTCTCGATCTCAAGAAGAACACAGGAAAGGAGGAATATAGAGCGCGTGAGCTGTTCTAC 265266 Query 123402 GCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTC 123461 || | ||| | || ||| | || ||| ||| || | || || ||||| || Sbjct 265267 GCACTCTGGATTCCTGATCTATTCATGAAACGAGTCCTGGCGGATGGTATGTGGAGTCTG 265326 Query 123462 ATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTG 123521 ||||| ||| | |||||| ||| | | ||| || || | ||||||| | | Sbjct 265327 ATGTGCCCCCACGAGTGTCCAGGCCTTTGTGACTCTTGGGGTGAAGAGTTTGAGAATCTC 265386 Query 123522 TACGCGCAATACGAGCGCGAAGGCAAA---CAGGTTAGTCAGGTTCCGGCACGTGATTTG 123578 |||| |||||||| ||| ||| || | ||||||| ||| |||||| | Sbjct 265387 TACGTAAAATACGAGAACGA-GGCTCGTTTCAAGC--GTCAGGTGAAGGCTCGTGATCTC 265443 Query 123579 TTCAA---ATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAA 123635 | | | || |||| |||||||||| || || || || |||||||| |||||| Sbjct 265444 TGGACTGCAATTCTTATGT---CACAAGTCGAGACTGGGACCCCCTACATGCTGTACAAA 265500 Query 123636 GACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTT 123695 ||||| |||||| ||||| ||||||||| ||||||||||| |||||||| || || | Sbjct 265501 GACGCATGCAACCGGAAATCCAATCAGAAGAACTTGGGAACGATAAAATGCAGCAACTTG 265560 Query 123696 TGCTCCGAAATTATCGAATACAGCGA-TGCCGATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 ||| | || || | || ||| ||| ||||| || | || || || |||||||| || Sbjct 265561 TGCACTGAGATCGTGGAGTAC-TCGAGCCCCGATGAAATTGCTGTTTGCAATTTGGCCTC 265619 Query 123755 GATTTGCGTGAA-----TCGT---TGCGTCGAAAACGGCGCTTTTAATTTCCAAACGCTC 123806 |||| || || |||| | | ||||| ||| | || | | ||| Sbjct 265620 GATTGCAGTTAACATGTTCGTGGATCCAGTGAAAA--AAACTTACGACTTTAAGAAGCTG 265677 Query 123807 AA-ACGCATAACAAAAACTGTAGTAA--AG-AATTTGAACAAAATTATCGATGTTAATTT 123862 || || |||| || || | || || | ||| | | ||||| || ||| Sbjct 265678 AAGACAGTCGTCAAA----GTTGTTACCAGAAACCTCGACAGAGTGATCGACGTCAATCA 265733 Query 123863 TTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCAT 123922 ||| || | ||| | || | || || ||| |||| | || | ||| | || | Sbjct 265734 TTACCCACTTGAGCAGGCAAAAGTCTCCAACGTGAGACACCGTCCCATGGGAATTGGAGT 265793 Query 123923 TCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAA 123982 ||| || |||| || || ||| || || |||| || | ||| ||||| || || | Sbjct 265794 TCAGGGTCTGGCAGATGCATTTCTACTGATGCGTTATCCATTCGACAGCGATGACGCCCA 265853 Query 123983 GTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGA 124042 | || |||| || || ||| || | |||||||| || | ||||| ||||| Sbjct 265854 GAAACTCAATATCCAGATCTTCGAGACCCTGTATTACGGTGCACTCGAGGCCTCATGCGA 265913 Query 124043 ACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTAT 124102 || || | | ||| | ||||| | ||| ||| || | |||| || || Sbjct 265914 GCTCGCCCAGGAGAAGGGCACCTACGAGACGTACAAAGGCTCACCAGTCAGCCAGGGCAT 265973 Query 124103 TTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAA 124162 | ||||||||||||||| || ||||| |||||| | ||||||||| || | || Sbjct 265974 CCTCCAGTACGACATGTGGGGTGTAACACCAACAAATCTCTGGGACTGG-GC---TAAAC 266029 Query 124163 ACAACG----CATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGA 124218 ||| | || || | |||||| | | ||||| || | |||| ||||| | Sbjct 266030 TCAAGGATAAAATTTCCAAACACGGTATCAGGAACTCTCTCCTACTGGCACCAATGCCAA 266089 Query 124219 CGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATT 124278 | || | || || |||||| | || |||||||| || ||||||| | ||| | |||| Sbjct 266090 CAGCCTCAACAGCCCAAATTCTTGGGAACAACGAGGCCATCGAGCCCTACACCAGCAATA 266149 Query 124279 TGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATC 124323 | ||| | |||| || || | || || || || ||| | |||| Sbjct 266150 TCTACTCGAGACGTGTATTGTCTGGTGAATTCCAGGTGGTCAATC 266194 >seq37 Length=1171872 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || || || || || ||||| ||||| ||||| |||||| Sbjct 189121 ATGCCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCG 189062 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||||||||| || || | ||||| || || || || || Sbjct 189061 GAAAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGT 189002 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||||||||||||||| || ||| | ||| | |||||| || | ||| Sbjct 189001 GGGATACCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCA 188942 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| |||||||| || ||||| ||||| || |||||||| Sbjct 188941 ACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188892 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| ||||| ||||| | ||| | ||| ||||||||| Sbjct 188866 TGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCCAATTGT 188807 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||||||||| || ||||| || ||||| || || || || Sbjct 188806 TTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTG 188747 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | |||||| |||| |||||| || || || | |||||||| || Sbjct 188746 GCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTGCCAGTC 188687 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || |||||||| Sbjct 188686 AGAGTCTTTACGAATATTTGCAT 188664 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | ||| | | || | ||| || || || || || |||||||| || || Sbjct 189349 ATTCCACCCCTGAGACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCC 189290 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||||||||| || ||| | ||||| || |||||||| || Sbjct 189289 GAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGT 189230 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| || || || || ||||| ||| | ||||| || | || Sbjct 189229 GGAATGCCTTCTTTGTCCTGTATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCA 189170 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | ||| || || || || || ||||| || || ||||| Sbjct 189169 ACTTCGAGGGTGATCGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 >seq425 Length=33725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||| || || || ||||| || || ||| || | || Sbjct 29719 TGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCATCTTCGAGCTGC 29778 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| | || ||||| || ||||| || || || || || ||||| Sbjct 29779 TTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATTTTG 29838 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | |||||||||| ||| || ||||| || | ||||| || ||| Sbjct 29839 GCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACCTCGAGGGTGATGGTTTTCCCCGTT 29898 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || ||||| Sbjct 29899 AGGGTTTTAACAAAGATCTGCAT 29921 >seq17 Length=1605837 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || | ||| || || || ||||| |||||||||||||| Sbjct 84218 ATGCCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCA 84277 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || |||| |||||||| ||| | ||||||| |||||||| || Sbjct 84278 GAAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGG 84337 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || ||||| |||| || | || | || || |||| ||| Sbjct 84338 GGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGA-CGTTCTCAATAGTATCCGAAGCCTC 84396 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || || ||||| || || || ||||| Sbjct 84397 AACCTCTAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCAT 84447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451997312658320