Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq17 114 3e-20 seq37 109 1e-18 seq7 95.1 3e-14 >seq17 Length=1605837 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| ||||| | || |||||||||||||| |||| |||||| |||| | || Sbjct 83999 CGAAGTCGAAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGAGAGTGTG 84058 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||||| |||||||| | | ||||||||| || |||||| Sbjct 84059 CGACCATCTTCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCC 84118 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| || ||||| |||||||| | || || || | Sbjct 84119 TCCTTGTCCTGGATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGG 84178 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || || || || Sbjct 84179 GTAATGGTTTTCCCTGTGAGGGTCTTGACGAAGATCTG 84216 >seq37 Length=1171872 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| ||||| || |||| |||||||| | | ||| |||||||| |||| || Sbjct 189322 TGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAAAGAGTTCTTCCATCCTCCAATTGT 189263 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || |||||||| | |||||||||||| || ||| |||||| ||||| ||||| Sbjct 189262 TTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGTATCTTG 189203 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || ||| | ||||| | | ||| || || | ||||||||||| || || Sbjct 189202 GCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGATCGTCTTTCCTGTA 189143 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || || || || || Sbjct 189142 AGTGTCTTTACGAATATCTG 189123 >seq7 Length=2059422 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| |||||| |||| | ||| | ||||| || || || || || ||||| | Sbjct 739752 CCTTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAA 739811 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||||| ||||| ||| |||||| ||| ||||||||||| || || || Sbjct 739812 TCAATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTGACATTTT 739871 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||| || | | || || || | ||||| ||||| ||||| | ||| || || | Sbjct 739872 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACGA 739931 Query 199620 AAATTTG 199626 |||| || Sbjct 739932 AAATCTG 739938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178905860659814