Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq17 116 4e-21 seq425 109 6e-19 seq37 86.0 7e-12 >seq17 Length=1605837 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| |||||| |||||||| || || || |||||||| |||| || Sbjct 84239 ACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGTCCGTCCTCC 84298 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || || ||||| ||||| | ||||||||| | || | | |||||||||| | Sbjct 84299 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84358 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| || | | || || | || || || | |||||||| ||| Sbjct 84359 ATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACCTCTAGGGTGATGGTCTTG 84418 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||||||| ||||| || || || |||||||| Sbjct 84419 CCCGTCAGTGTTTTCACGAATATCTGCATTTT 84450 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| |||||| ||||||||||| || || |||||||| |||| || Sbjct 83783 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83842 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || || ||||| ||||| | ||||||||| | || | | |||||||||| | Sbjct 83843 AGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 83902 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| || | | ||||| || || || || | || |||||||| Sbjct 83903 ATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 83962 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||| Sbjct 83963 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| |||| || ||||| || || ||||| Sbjct 83572 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAA 83631 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | ||| |||||| ||| || ||||| | Sbjct 83632 GATCAATCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATT 83691 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | ||||||||||| || || || || || || Sbjct 83692 TTCGATGGTGTCTGACGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTCTTGAC 83751 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 83752 GAAGATCTGCAT 83763 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || || || ||||| |||| || ||||| || || ||||| Sbjct 82988 TCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAG 83047 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | |||||||||| ||| || ||||| | Sbjct 83048 ATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTT 83107 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || || | ||||||||||| || || || || || || Sbjct 83108 TCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACG 83167 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 83168 AAGATCTGCAT 83178 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || || || ||||| |||| || ||||| || || ||||| Sbjct 83345 TCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAG 83404 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | |||||||||| ||| || ||||| | Sbjct 83405 ATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTT 83464 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || || | ||||||||||| || || || || || || Sbjct 83465 TCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACG 83524 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 83525 AAGATCTGCAT 83535 >seq425 Length=33725 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||| || || |||||||| | || ||||||||||| || ||||| Sbjct 29731 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAG 29790 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||| ||||| | || | | |||||||||| ||| || |||| | Sbjct 29791 ATCAGCCTCTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTT 29850 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || || | ||||||||||| ||||| || ||||||||| Sbjct 29851 TCGATTGTGTCGGAAGCCTCTACCTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACA 29910 Query 46583 AAGATTTGCATTTTG 46597 ||||| ||||| ||| Sbjct 29911 AAGATCTGCATGTTG 29925 >seq37 Length=1171872 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| |||||||| || || ||||| | | || || | || || || ||||| Sbjct 188854 TCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAG 188795 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | | ||| |||||| |||||| ||||| | Sbjct 188794 ATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTT 188735 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || |||| |||||||||||||| ||||| || || || Sbjct 188734 TCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACG 188675 Query 46583 AAGATTTGCATT 46594 || ||||||||| Sbjct 188674 AATATTTGCATT 188663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565231037769840