Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq109 179 4e-40 seq113 154 2e-32 seq47 100 3e-16 seq31 82.4 9e-11 >seq109 Length=386716 Score = 179 bits (198), Expect = 4e-40 Identities = 1134/1810 (63%), Gaps = 43/1810 (2%) Strand=Plus/Minus Query 109411 AGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGT 109470 || || ||||| || || || | ||||||| ||| || | | |||||| || | |||| Sbjct 266495 AGGTAGTACATTCCAGTCTTCAAGCCAGCCTCCCAACCGAAGAAATGCATGGAGGTGAGT 266436 Query 109471 TTGGAAAGTGTCGGACTCTCCATA--AACAAGTTCATCGACTGAGACTGATCGATGAATC 109528 || | ||| ||| | | || |||| || | ||||| |||||||||||||| Sbjct 266435 TTTTCAGTTGTTGGATTTGCTATGTGAACA--TTGAGAGACTGGGACTGATCGATGAAGG 266378 Query 109529 GACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGT 109588 ||||||||||| ||||| | || ||| | | ||| ||| |||||||| || ||| Sbjct 266377 CCCCACGATCAGCTGCCATCTTGAGGATCATCCTCTGGGGAATCTCCCAGACTGTTCTGT 266318 Query 109589 ACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCA 109648 ||| |||||| || | || ||| ||||||| || || |||||| | | Sbjct 266317 ACAGTGCCTTGATGTCTGCTGGGATGCTGTCGATGTTCTGGATCGAGCCATTGTTCGCTA 266258 Query 109649 CCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGAT 109708 || || | | ||||||| | |||||| | || |||| || | | |||| Sbjct 266257 TTATCAGGTTCCTCATCTCGTCGTCCCAGAGGTTGCGCTCGGTGAGGTCCTTCAGGAGAT 266198 Query 109709 GCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGT 109768 | |||||||| |||||||||| | | |||| |||||| || | |||| Sbjct 266197 GGGGATTGACCACCTGGAATTCACCAGACAATACACGTCTCGAGTAGATATTGCTGGTGT 266138 Query 109769 AGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAG 109828 |||| |||| ||| ||||| || || ||||| || || || ||||| ||||| || | Sbjct 266137 AGGGCTCGATGGCCTCGTTGTTCCCAAGAATTTGGGCTGTTGAGGCTGTTGGCATTGGTG 266078 Query 109829 CCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGT----CC 109884 ||| || ||| ||| | || ||| || ||| | | ||| || || Sbjct 266077 CCAGTAGGAGAGAGTTCCTGATACC----GTGTTTGGAAATTTTATCCTTGAGTTTAGCC 266022 Query 109885 CAATCATAACGACCACTAAATT--TAGTCTCACCATCCCACATATCTGGTTGAAGTACAC 109942 || || ||| | || | || | || | ||||||| || || || | | Sbjct 266021 CAGTC-------CCAGAGATTTGTTGGTGTTAC-ACCCCACATGTCGTACTGGAGGATGC 265970 Query 109943 CCTCAGCAG-CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCG 110001 ||| || | | || || || ||| | ||||||| | |||| ||| ||| | |||| Sbjct 265969 CCTG-GCTGACTGGTGAGCCTTTGTACGTCTCGTAGGTGCCCTTCTCCTGGGCGAGCTCG 265911 Query 110002 GATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGA 110061 |||| ||||| ||||| | | ||||| ||||| || || || ||| | | Sbjct 265910 CATGAGGCCTCGAGTGCACCGTAATACAGGGTCTCGAAGATCTGGATATTGAGTTTCTGG 265851 Query 110062 GACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACA 110121 | || || | |||||| ||| || || | ||| |||| || ||||||||||| Sbjct 265850 GCGTCATCGCTGTCGAATGGATAACGCATCAGTAGAAATGCATCTGCCAGACCCTGAACT 265791 Query 110122 CCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAG 110181 || | || ||||| || || ||| ||| ||| | || || | |||||| Sbjct 265790 CCAATTCCCATGGGACGGTGTCTCACGTTGGAGACTTTTGCCTGCTCAAGTGGGTAATGA 265731 Query 110182 TTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTG 110241 ||| |||||| || | | ||| || | || ||| || || | | || || Sbjct 265730 TTGACGTCGATCACTCTGTCGAGGTTTCTGGTAACAACTTTGACGACTGTCTTCAGCTTC 265671 Query 110242 TCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGA 110301 | | ||| | ||||| || | || || | || | ||||| || || | | Sbjct 265670 TTAAAGTCGTAAGTTTTTTTCACTGGATCCACGAACATGTTAACTGCAATCGAGGCCAAA 265611 Query 110302 TTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAA 110361 ||||| |||| | | || || | | ||| |||| || || || ||||||||| Sbjct 265610 TTGCAAACAGCAATTTCATCGGGGCTCGAGTACTCCACGATCTCAGTGCACAAGTTGCTG 265551 Query 110362 CTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGC 110421 | || || ||||||||||||||||| ||||| ||||||||| || || || ||| Sbjct 265550 CATTTTATCGTTCCCAAGTTCTTCTGATTGGATTTCCGGTTGCATGCGTCTTTGTACAGC 265491 Query 110422 ATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCG 110481 ||||| ||||| ||||| || |||||| | ||||| || |||| | ||| || Sbjct 265490 ATGTAGGGGGTCCCAGTCTCGACTTGTGACATAAGAATTGCAGTCCAGAGATCACGAGCC 265431 Query 110482 GGGACAGTTGCGTTAGCGA-GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTC 110540 || | || | | | || | || | |||||| || ||| | | |||||| || Sbjct 265430 TTCAC-CTGACGCTTGAAACGAGCCTCGTTCTCGTATTTTACGTAGAGATTCTCAAACTC 265372 Query 110541 CTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCC 110600 | || | ||| |||| || || || ||| || | || ||| | || Sbjct 265371 TTCACCCCAAGAGTCACAAAGGCCTGGACACTCGTGGGGGCACATCAGACTCCACATACC 265312 Query 110601 ACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG 110660 | || || || | |||||||| || ||||||||||| | || |||| || ||||| Sbjct 265311 ATCCGCCAGGACTCGTTTCATGAATAGATCAGGAATCCAGAGTGCGTAGAACAGCTCACG 265252 Query 110661 GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGA 110720 | | || || | ||| ||| || || | || || | ||| || | Sbjct 265251 CGCTCTATATTCCTCCTTTCCTGTGTTCTTCTTGAGATCGAGAACATCAAAGATGTCAGC 265192 Query 110721 GTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTT 110774 |||||| || |||||||| | || | || | | |||| || |||| | Sbjct 265191 GTGCCAGGGCTCGAGATAAATGGCAA---ATGCGCCAGGACGTTTGTTTCCACCCTGATC 265135 Query 110775 AACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACC 110834 ||| || ||||||||| |||| | || | ||||| || | || |||| |||| ||| Sbjct 265134 AACGTAACGTGCTGTGTTATTGTAAACACGAAGCATGGGTACAAGCCCATTGGATACACC 265075 Query 110835 ATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACC 110894 ||| ||||| ||||| | | ||||| | || ||| | || || |||||||| Sbjct 265074 ATTGGTACCAGCAATTCGTGTCCCCTTGGCTCTGATACAGTGAACATTCACTCCAATACC 265015 Query 110895 ACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCG 110953 ||| || |||| || | ||||||| |||| |||| || | || || ||||| || Sbjct 265014 ACCAGCTGACTTGCTGACAAGTGCACACCTCT-TGAGGGTGTCGTAGATGCCATCGATGC 264956 Query 110954 AATCTGCCTTGTTGGCAATTAGAAAGCAAGA---AGACATCTGAGGACGAGGCGTTCCCG 111010 || | | | | |||||| | || | |||||||| | | || | | Sbjct 264955 TGTCCTCAGTCATTG---TTAGAAGGAAACAGCTGGACATCTGTTGTATACAAGTGCAGG 264899 Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGT 111070 | |||||| || |||| || ||| |||| | | ||||| | ||||||||| | Sbjct 264898 CTGAGAAGAGGGTTGGTGATGCGTGAGTGAAGTATCTCTCGGACAGATAGTTGTATGTCT 264839 Query 111071 CGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATT 111130 | | | || | ||| | |||| || || | || |||| ||| | ||| | Sbjct 264838 CAATGACCCTGGCGATATCCTCCTCGTGTATTCCCACAGCCACTCTCATCAGCATGTGGG 264779 Query 111131 GAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGA 111190 |||| | || | | || |||| | | | | ||||||||| |||| |||||||||| Sbjct 264778 CAGGCCTCTCAACGACTTTGCCATTGATCCTCAGCAGGTAACTCCTCTCAAGGGTCTTGA 264719 Query 111191 GACCAAAGTA 111200 |||||||| Sbjct 264718 AGCCAAAGTA 264709 >seq113 Length=346302 Score = 154 bits (170), Expect = 2e-32 Identities = 682/1070 (64%), Gaps = 30/1070 (3%) Strand=Plus/Plus Query 109411 AGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGT 109470 || || ||||| || || || || |||| || |||| || | | |||||| || | ||| Sbjct 256326 AGGTAGTACATTCCAGTCTTCAGGCCAGACTCCCATCCGAAGAAATGCATGGATGTGAGC 256385 Query 109471 TTGGAAAGTGTCGGACTCTCCATA--AACAAGTTCATCGACTGAGACTGATCGATGAATC 109528 || | || ||| | ||||| |||| || | ||||| ||||| |||||||| Sbjct 256386 TTCTCGGGAGTTGGATTTGCCATATGAACA--TTGGTGGACTGGGACTGGTCGATGAAGG 256443 Query 109529 GACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGT 109588 ||||||||||| ||||| | || ||| | | ||| |||||||||||| || ||| Sbjct 256444 CCCCACGATCAGCAGCCATCTTGAGGATCATCCTCTGGGGAATTTCCCAGACTGTTCTGT 256503 Query 109589 ACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCA 109648 ||| ||||| || | || |||| ||||||| || || |||||| || || Sbjct 256504 ACAGTGCCTTGAGGTCTGCTGGGATGTTGTCGATGTTCTGGATCGAGCCA-TTGC--TCG 256560 Query 109649 CCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAA 109705 | || | | | |||||| || | ||||||| | || |||| || | | | Sbjct 256561 CTATTATCTGGTTCTTCATGTCGTCGTCCCAGAGATCACGCTCGGTGAGGTCCTTCAGCA 256620 Query 109706 GATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCG 109765 |||| ||||| || |||||||||| ||| || | ||||||||| | | Sbjct 256621 GATGGGGATTGACTACTTGGAATTCACCAGACAGTACACGCCTCGCGTAGATGTTGCTGG 256680 Query 109766 TGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGG 109825 |||| || || | ||| ||||| || || ||||| || || || ||||| ||||| | Sbjct 256681 TGTAAGGCTCAATGGCCTCGTTGTTACCCAGAATTTGGGCTGTTGAGGCTGTTGGCATTG 256740 Query 109826 GAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGT--- 109882 | |||| || ||| ||| | | || ||| |||| | | ||| || Sbjct 256741 GTGCCAGTAGGAGAGAGTTCCTAATAC----CGTGTTTAGATATTTTATCCTTGAGTTCA 256796 Query 109883 -CCCAATCATAACGACCACTAAAT--TTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 |||| || ||| | | || || | | || ||||||| || || || | Sbjct 256797 GCCCAGTC-------CCAGAGATTTGTTGGTGTTA-CACCCCACATGTCATACTGGAGGA 256848 Query 109940 CACCCTCAGCAG-CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998 |||| || | | || || || ||| | ||||||| | |||| ||| ||| | | Sbjct 256849 TGCCCT-GGCTGACTGGTGAGCCTTTGTACGTCTCGTAGGTGCCCTTCTCCTGGGCGAGC 256907 Query 109999 TCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058 ||| |||| ||||| || || ||| ||||| ||||| || || || ||| | Sbjct 256908 TCGCATGAGGCCTCGAGGGCACCATAATACAGGGTCTCGAAGATCTGGATATTGAGTTTC 256967 Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118 | | ||| | | |||||| ||| || || | ||| |||| || ||||||||| Sbjct 256968 TGGGCCTCATTGCTGTCGAATGGATAACGCATCAGTAGAAATGCATCTGCCAGACCCTGA 257027 Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178 || || | || ||||| ||||| ||||||| ||| || || || | |||||| Sbjct 257028 ACTCCAATTCCCATGGGACGATGTCTCATGTTGGAGACTCTTGCCTCCTCGATTGGGTAA 257087 Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGT 110238 | ||| ||||| || | | |||||| | | || | || || | | || Sbjct 257088 TAATTGACATCGATAACTCTGTCGAGATTTCTTGCGACGATTTTGACGACTGTCTTCAGC 257147 Query 110239 TTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCA 110298 |||| | | | | || || || | | || | || || ||||| || || Sbjct 257148 TTGTTAAAGTTGTAAGTCTTTTTCACTGGGTCCACGAACATGTTGACTGCAATCGAGGCC 257207 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 | |||||| |||| | || || | | ||| || | || || |||||||||||| Sbjct 257208 AAATTGCAAACAGCAACTTCATCGGGGCTCGAGTACTCGACGATCTCAGTACACAAGTTG 257267 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 | || || ||||||||||||||||| ||||| |||||||| ||||| || Sbjct 257268 CTGCATTTTATCGTTCCCAAGTTCTTCTGATTGGATTTTCTATTGCATGCGTCCTTGTAC 257327 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468 |||||||| || || ||||| || |||||| | ||||| || |||| Sbjct 257328 AGCATGTAGGGAGTTCCAGTCTCGACTTGTGACATAAGAATTGCAGTCCA 257377 >seq47 Length=978588 Score = 100 bits (110), Expect = 3e-16 Identities = 143/201 (71%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574 ||||||| | || ||||| ||||||||||| ||| ||||||||||| || | ||| | Sbjct 561881 CTTCATCTCTGGATATGAGTTCATTACTGAACGTAAGACCAGGCATGAGCCCACGTTTTT 561822 Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAG 119634 | ||||| || || ||| ||||| ||||||||||| || || || ||| || || | Sbjct 561821 TCAGCCAGAATATCGCAGCGAAACTACCAGAAAAGAAAATCCCTTCAACAGCAGCAAAGG 561762 Query 119635 CGAATAGACGCTCAGCAAAAGGTCGAGACTTGT---CGAACCACTTGAGAGCCCAGTTGG 119691 | | | | ||||| || | | | || || || ||| |||||||||||||||| Sbjct 561761 CAATCACTCTTTCAGCGAAGGTTGCTGTCTCGTTTGTGATCCAGTTGAGAGCCCAGTTGG 561702 Query 119692 CCTTACGCTCTATGCAGGGGA 119712 | || ||| |||||||| Sbjct 561701 CTTTTTTTGCTACGCAGGGGA 561681 >seq31 Length=1285234 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 136713 CTTAT-AGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||||| |||||||||||||||||||| ||||| ||||||| |||||| ||||||||| || Sbjct 45091 CTTATTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCC 45150 Query 136772 CC 136773 || Sbjct 45151 CC 45152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588968328587600