Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq76 95.1 1e-14 >seq76 Length=671789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 200/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 158398 CAACCTGTAGGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATT 158457 ||||| |||||| | || |||||||| | |||| | || | |||||| | Sbjct 243435 CAACCCCCAGGTGAATTCGGCGTTGACATTTGCATTGGTACAAGCCAGCGATTTGGTGTA 243494 Query 158458 CCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGA 158517 || |||||||||| ||||| || || | ||| ||||| | || | || Sbjct 243495 CCCCTGGGATACGGTGGTCCCCACGCCGGATTTTTTGCGTGTCGCAAGAATTTCGTTAGG 243554 Query 158518 AAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATA-GC-GAAGGTAATAAAGCATACA 158575 ||| || || ||||| | ||| || | |||| | || || || || |||| |||| Sbjct 243555 TTGATGCCAGGAAGAATGATCGGT--GTAACTAGAGATGCAGACGGCAAAGAAGCGTACA 243612 Query 158576 GATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCT 158635 || | || || || || |||||||||| |||||||| |||||||| || |||||||||| Sbjct 243613 GACTGGCCCTTCAAACACGAGAGCAGCACATCAGAAGGGACAAAGCTACGAGTAACATCT 243672 Query 158636 GCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 | || || ||||| | | || || |||||| | ||||||| || ||||| Sbjct 243673 GTACGGCCCAAGCGTTATTAGCAAACATGTCTACAATGTATGCAGTCTACCATGG 243727 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 159604 TGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCA 159663 ||| | || || |||||| ||| |||||||||||||| ||||| || ||| | || || Sbjct 244730 TGTGATATGGTACATGAGGCTGGGGGTCAGGTATATCTCGATGGGGCCAATATGAACGCT 244789 Query 159664 CAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACAT 159723 ||||| || || | ||| | ||||| ||| || || | || || || | || Sbjct 244790 CAGGTGGGCCTTTGCAGACCTGGGGACTACGGTAGTGACGTCTCGCACCTGAATCTTCAC 244849 Query 159724 AAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||||| ||||| ||||| || || |||||||| | || || || || || Sbjct 244850 AAGACATTCTGCATTCCCCATGGGGGAGGGGGTCCTGGTATGGGGCCCATCGGCGT 244905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588043540633120