Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq37 185 2e-41 seq17 145 2e-29 seq7 143 6e-29 seq425 138 3e-27 >seq37 Length=1171872 Score = 185 bits (204), Expect = 2e-41 Identities = 164/205 (80%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||||||||||||||| | ||||||||| ||||| || | || Sbjct 188867 GTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCCAATTG 188808 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| ||||||||||| ||||| |||||||||||||| || |||||||| || || || Sbjct 188807 TTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTT 188748 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||||||||| ||| || || || ||||| | || || || || Sbjct 188747 GGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTGCCAGT 188688 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||| |||||||| | ||||||| Sbjct 188687 CAGAGTCTTTACGAATATTTGCATT 188663 Score = 168 bits (186), Expect = 1e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | | ||| | || |||||||||||||| || |||||||| || | ||||||| Sbjct 189340 CTGAGACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAAAGAGTT 189281 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || ||||| || | || ||||| |||||||| | || || |||||||| ||||||||| Sbjct 189280 CTTCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCT 189221 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 |||||||| || || || ||||| || ||||| ||||| || ||| ||||| ||| Sbjct 189220 TCTTTGTCCTGTATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGG 189161 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||||||| | || |||||||| | ||||| Sbjct 189160 GTGATCGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 Score = 163 bits (180), Expect = 6e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| || || |||||||| |||||||| | ||||||||| ||||| || Sbjct 188645 AACCAAGTGAAGAGTCGATTCCTTTTGAATGTTGTAATCTGAAAGAGTTCTGCCATCCTC 188586 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| ||||||||||| ||||| |||||||||||||| || |||||||| || Sbjct 188585 AAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTG 188526 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTC 195095 || || |||||| || |||||||| || ||| || ||||| Sbjct 188525 GATCTTGGCCTTGACATTTTCAATGGTATCAGAAGCCTCGACTTC 188481 Score = 159 bits (176), Expect = 8e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || ||||| |||||||||||||||||||||| ||||||||| ||||| || Sbjct 189101 AACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTC 189042 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || ||||| | || ||||| ||||| || || |||||||| ||||| Sbjct 189041 CAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTG 188982 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || || || || || |||||||| || || || || || |||| || || Sbjct 188981 AATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTT 188922 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| ||| |||||||| | ||||||| Sbjct 188921 GCCAGTCAGAGTCTTTACGAATATTTGCATT 188891 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | |||||| || || ||||||||||| ||||| || | ||||| Sbjct 189569 TCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAGAGAGT 189510 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || || || ||||| |||||||| | ||||| || || ||||| ||||| Sbjct 189509 TCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATGCC 189450 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || || || || |||||| || ||||| || || || || |||||||| Sbjct 189449 CTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACTTCAAG 189390 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | |||||||| |||| ||| || || || | |||||| Sbjct 189389 TGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCATT 189347 >seq17 Length=1605837 Score = 145 bits (160), Expect = 2e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| || || ||||| ||||| | |||||| | || || || ||||| Sbjct 84245 TGAAGGGTAGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGTCCGTCCTCCAGCTGT 84304 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | || || |||||||| ||||| || || ||||| || ||||| Sbjct 84305 TTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATTTTA 84364 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||||||||| || |||||| || || || ||||| | ||||| || ||| Sbjct 84365 GCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACCTCTAGGGTGATGGTCTTGCCCGTC 84424 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 | ||||| ||||| | ||||||| Sbjct 84425 AGTGTTTTCACGAATATCTGCATTT 84449 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| || || ||||||||||| | |||||| | || || || ||||| Sbjct 83789 TGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCGTCCTCCAGCTGT 83848 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || | || || |||||||| ||||| || || ||||| || ||||| Sbjct 83849 TTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATTTTA 83908 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||||||||| ||||| || || || |||||||||| || || ||||| Sbjct 83909 GCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTCCCTGTG 83968 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 83969 AGAGTCTTGACGAAGATCTGCAT 83991 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || || || || |||||||| | || || | || || || ||||| Sbjct 82975 GTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTG 83034 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | || || |||||||| ||||| || || ||||| || ||||| Sbjct 83035 TTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTT 83094 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| ||| || || |||||||| | || || ||||| Sbjct 83095 AGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGT 83154 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 83155 GAGAGTCTTGACGAAGATCTGCAT 83178 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || || || || |||||||| | || || | || || || ||||| Sbjct 83332 GTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCCAGCTG 83391 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | || || |||||||| ||||| || || ||||| || ||||| Sbjct 83392 TTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATTTT 83451 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| ||| || || |||||||| | || || ||||| Sbjct 83452 AGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTTCCCTGT 83511 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 83512 GAGAGTCTTGACGAAGATCTGCAT 83535 >seq7 Length=2059422 Score = 143 bits (158), Expect = 6e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || |||||||| | ||||| | |||||| ||||| || || || ||||| || Sbjct 739754 TTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAATC 739813 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| ||||||||||||||||| || ||||| || ||||| || ||||| || || Sbjct 739814 AATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTGACATTTTCG 739873 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||||| || ||| || || |||||||| | |||||||| |||||||| || ||||| Sbjct 739874 ATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACGAAA 739933 Query 195133 ACTTGCATT 195141 | |||||| Sbjct 739934 ATCTGCATT 739942 >seq425 Length=33725 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||||| || | |||||| || || || || ||||| |||||||| | ||||| | || Sbjct 29706 TCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCC 29765 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||||||||||||||| |||||||| || | ||||||||||| ||||| || || || Sbjct 29766 ATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCCTCCTT 29825 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||| || ||||| ||||| || || || ||||| ||| || || || ||||| | Sbjct 29826 GTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACCTCGAGGGTGAT 29885 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || | ||||| || || | ||||| Sbjct 29886 GGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCAT 29921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109466787727214