Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq113 111 2e-19 seq47 93.3 5e-14 >seq113 Length=346302 Score = 111 bits (122), Expect = 2e-19 Identities = 386/599 (64%), Gaps = 14/599 (2%) Strand=Plus/Plus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| |||| ||| || ||||| || || ||| | || | | || ||| || | Sbjct 257527 TCATGAATAAATCCGGGATCCAGAGTGCGTAAAAAAGTTCACGTGCTCGATATTCCTCTT 257586 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | || | || | || || || |||| || | ||| ||||| ||||| || || | || Sbjct 257587 TTCCTGTGTTTTTCTTGAGATCGAGAACATCGAATATGTCAGCGTGCCAGGGCTCGAGAT 257646 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | || || | | | || || ||||| || || || ||||| | ||| | || || || | Sbjct 257647 AAATGGCAAATGCTCCAGGACGTTTGTTTCCACCCTGATCAACATAACGTGCTGTGTTAT 257706 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | ||||| | | ||| || |||| ||||| |||||||||||||| || | ||| Sbjct 257707 TGTAAACACGAAGCATGGGTACAAGCCCATTGGATATACCATTGGTACCAGCAATTCGTG 257766 Query 48451 TTCCACTAGCTCTTATA----TTACTAATTGAAATACCTATACCACCTGCCATTTTAGAT 48506 | || | ||||| ||| ||| ||| | || || ||||| || ||| Sbjct 257767 TCCCCTTGGCTCTGATACAGTGTAC--ATT--CACTCCAATTCCACCAGCTGATTTGCTG 257822 Query 48507 ATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTT 48566 || || ||||||| || ||||| || || || || | || || || || |||| | Sbjct 257823 ATGAGTGCACACCTCTTGAGGGTGTCGTAGATGCCATTAATGCTGTCGTCAGTCATTGTC 257882 Query 48567 AATAGAAAACAACTAGACATTTGCGGATGACAAGTTC---CTGAATTAAATAATGTTGGA 48623 | |||||||| || ||||| || | || ||| | |||| || | ||||| Sbjct 257883 AGGAGAAAACAGCTGGACATCTGTTGTCTACCAGTGCAGGCTGA---GAAAAGGGTTGGT 257939 Query 48624 GATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATA 48683 ||||| ||| | || || |||| || | | || ||||| ||||| || || || Sbjct 257940 GATGCGTGAGTGAAGTATCTCTCGGACAGATAGTTGTATGTCTCAATGACCCTGTCGATG 257999 Query 48684 TCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATT 48743 ||| || ||||| || | || || | ||| | ||| | ||| || ||| | | | Sbjct 258000 TCCTCTTCGTGTATTCCCACAGCCACTCTCATCAGCATGTGGGCAGGCCTCTCAGCTACT 258059 Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || ||| || |||| ||||| | | || | || || || |||||||| ||||| Sbjct 258060 TTACCATTGATCTTCAGCAGATAACTTCTCTCGAGGGTCTTGAATCCAAAATAATTGTA 258118 >seq47 Length=978588 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| || ||||| |||||||| || || | ||||| ||||| |||||||||||||| Sbjct 561204 TACATCTCCGAATGTATATTTTCCATTGCAACTTGAAACCCGTAGAAACATCTTGCTTCA 561145 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 || | || ||||| || |||| ||| || | ||| ||||| || |||||||| Sbjct 561144 GTGACTTGGACTTCTTGACTGAATCGTTCCACTAGATTCTCATTCACAATTCCATCTGAT 561085 Query 19375 GCTGCAAAAAATGCTA 19390 || || ||||| |||| Sbjct 561084 GCAGCGAAAAACGCTA 561069 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| |||||| ||||||||||||| | ||| | || || ||||||||||| ||||| || Sbjct 564591 CATAACTCCCCATTTTTGATATTCGCCGACTTTCTTCTCGAAGAAATTAGTCTTTCCTTC 564532 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATA 18763 || || || ||||||||| || |||||||||| | ||||||| Sbjct 564531 TAGCGAAATTTGTTCCATAAAGTCGAATGGATTTTCTGAGTTATATA 564485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| ||| | ||||||| || || | ||||||||| || || | |||||| Sbjct 561879 TCATCTCTGGATATGAGTTCATTACTGAACGTAAGACCAGGCATGAGCCCACGTTTTTTC 561820 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| | ||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 561819 AGCCAGAATATCGCAGCGAAACTACCAGAAAAGAAAATCCCTTCAACAGCAGCAAAGGCA 561760 Query 19105 ACTAGTCTTTC 19115 | | |||||| Sbjct 561759 ATCACTCTTTC 561749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101478532880