Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 >seq1 Length=5503185 Score = 111 bits (122), Expect = 1e-19 Identities = 180/258 (70%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 30133 CCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCG 30192 |||| ||||||||| ||| | |||||| | || || | |||||||||||||| || Sbjct 1252009 CCCGTGTAGTCTGCGTGCATATGCGTGTATTTGGCACCTGAGTGCCTCCACTGGAAGCCA 1251950 Query 30193 TACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCT 30252 || | ||| ||||| || ||||| || | | || ||||| || | | | Sbjct 1251949 TAGATCGGCCCCAGATCCCCCTCCTCACGATCCTTAAAGCCATATGCATCGAGATATATA 1251890 Query 30253 CTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG 30312 | |||| ||||| |||||||| || || ||| ||| || || |||| || || ||| Sbjct 1251889 CGAGAACTATTGGCATCCCAGATTTTAACTCCCCTCTTCGACAGGTCTTGGGCATTCGTG 1251830 Query 30313 GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTC 30372 || || |||| |||||| || || ||||| || || ||||||||||||| || || Sbjct 1251829 GATCCACTGATGAACCAGAGAAGTTCCTCGACTACTCCCTTCCAAAAGACGTCTTTTGTG 1251770 Query 30373 GTGAGGAG-GGGAAACTG 30389 || || || |||||| || Sbjct 1251769 GTCAGCAGTGGGAAAATG 1251752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408612410811866