Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq37 114 1e-20 seq17 107 1e-18 seq425 102 6e-17 seq7 95.1 9e-15 >seq37 Length=1171872 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||||||||| || ||| ||| | || ||||| || ||||||||||| Sbjct 189082 TCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAG 189023 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||||||||| | || | || || || || |||||| ||| ||| Sbjct 189022 ATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCTTTAACATTT 188963 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||| ||||||| ||||| ||||| || |||| ||| ||||| Sbjct 188962 TCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACG 188903 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 188902 AATATTTGCAT 188892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || ||||||||||||||||| || ||| ||| | || ||| Sbjct 188872 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCC 188813 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || || || || || || || | |||| ||||| ||||| Sbjct 188812 AATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGG 188753 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || ||||| ||||||| || || ||||| Sbjct 188752 ATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTG 188693 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||| ||||| || || ||||| Sbjct 188692 CCAGTCAGAGTCTTTACGAATATTTGCAT 188664 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || || ||||||||||| ||||| || || Sbjct 189574 CCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAG 189515 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || |||| || ||||| || || |||| || || ||||| | || Sbjct 189514 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 189455 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || ||||| || ||| | | || || || ||||| || Sbjct 189454 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACT 189395 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| |||| ||| || |||||||||||||| Sbjct 189394 TCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCAT 189348 >seq17 Length=1605837 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || |||||||||||||| ||| | || |||| ||| Sbjct 83783 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83842 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || || || |||| || ||| || || | ||||| ||||||||||| Sbjct 83843 AGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 83902 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || || | | || ||||||||||| ||||| | ||||| ||||| Sbjct 83903 ATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 83962 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || || || |||||||| Sbjct 83963 CCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || || ||||||||||| || | ||| | || ||| Sbjct 84011 ACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGACCATCTTCC 84070 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || || || |||| || ||| || || | ||||| ||||||||||| Sbjct 84071 AATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84130 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | ||||||||||| ||||| | ||||| ||||| Sbjct 84131 ATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTTC 84190 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 84191 CCTGTGAGGGTCTTGACGAAGATCTGCAT 84219 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || ||||| |||||||| ||| | || |||| ||| Sbjct 84239 ACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGTCCGTCCTCC 84298 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || || || |||| || ||| || || | ||||| ||||||||||| Sbjct 84299 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84358 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || || | | || || || ||||| ||||| | || || || || Sbjct 84359 ATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACCTCTAGGGTGATGGTCTTG 84418 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| ||||| || || |||||||| Sbjct 84419 CCCGTCAGTGTTTTCACGAATATCTGCAT 84447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||||||||| ||| | || |||| ||| Sbjct 83555 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83614 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || || || |||| || ||| || || | ||||| ||||| ||||| Sbjct 83615 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGG 83674 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | ||||||||||| ||||| | || || ||||| Sbjct 83675 ATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTGATGGTTTTC 83734 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 83735 CCTGTGAGGGTCTTGACGAAGATCTGCAT 83763 >seq425 Length=33725 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || || ||||| ||||||||||| ||| | || | || || Sbjct 29713 ACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCATCTTCG 29772 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| || || ||||| | |||||| || | ||||| ||||||||||| Sbjct 29773 AGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 29832 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || ||||| ||||| | || || ||||| Sbjct 29833 ATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACCTCGAGGGTGATGGTTTTC 29892 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||||| ||||| |||||||| Sbjct 29893 CCCGTTAGGGTTTTAACAAAGATCTGCAT 29921 >seq7 Length=2059422 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 ||||| || ||||||||||| ||| | || | || || | || || || || || ||| Sbjct 739754 TTTTGGATGTTGTAATCAGAGAGAGTACGCCCATCCTCGAGTTGTTTCCCAGCGAAAATC 739813 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 | ||||||||| || | |||| ||||| || || |||||| ||| ||| | Sbjct 739814 AATCGCTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGAATCTTGGCTTTGACATTTTCG 739873 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || || | ||| ||||| | || || || |||||||||||||| || || ||| Sbjct 739874 ATGGTATCAGAAGGCTCAACCTCAAGGGTGATAGTCTTTCCCGTCAAAGTCTTGACGAAA 739933 Query 48759 ATCTGCATCGTG 48770 |||||||| ||| Sbjct 739934 ATCTGCATTGTG 739945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380932762330566