Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq109 239 8e-58 seq113 219 8e-52 seq47 84.2 4e-11 >seq109 Length=386716 Score = 239 bits (264), Expect = 8e-58 Identities = 852/1308 (65%), Gaps = 59/1308 (5%) Strand=Plus/Minus Query 212697 TTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGAT-ATC 212755 || || ||||| ||| || ||||| | | | ||||| ||||| | | ||| ||| Sbjct 266405 TTGAGAGACTGGGACTGATCGATGAAGGCCCCACGATCAGCTGCCATCTTGAGGATCATC 266346 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 ||||||| | |||||| || || || | | | | |||| ||| |||||| || | Sbjct 266345 -CTCTGGGGAATCTCCCAGACTGTTCTGTACAGTGCCTTGATGTCTGCTGGGATGCTGTC 266287 Query 212816 GATGTTCTGCACAGACCCCCTGTG---TATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 ||||||||| | || || ||| ||| |||| | | | ||| || |||| ||| Sbjct 266286 GATGTTCTGGATCGAGCCATTGTTCGCTATTATCAGGTTC---CTCATCTCGTCGTCCCA 266230 Query 212873 GAGGCCCCTGGTCTCC---AGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACC 212929 |||| || ||| ||| ||| | || || || ||||| | |||||| ||||| Sbjct 266229 GAGGT---TGCGCTCGGTGAGGTCCTTCAGGAGATGGGGATTGACCACCTGGAATTCACC 266173 Query 212930 TGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCC 212989 || | || | ||| ||| | || ||||||||||||||| |||||||||||| Sbjct 266172 AGACAATACACGTCTCGAGTAGATATTGCTGGTGTAGGGCTCGATGGCCTCGTTGTTCCC 266113 Query 212990 CAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049 ||||| || || || |||||| ||||| || |||| |||||| |||||| | || Sbjct 266112 AAGAATTTGGGCTGTTGAGGCTGTTGGCATTGGTGCCAGTAGGAGAGAGTTCCTGATACC 266053 Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 ||| | | || | || | ||||||||||| ||| || | || Sbjct 266052 GTGTTTGGAAATTTTATCCTTGAGTTTAGCCCAGTCCCAG-----AGATTTGT--TGGTG 266000 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169 | ||| ||||||||| |||| | |||||| | ||| || || ||| | ||| | Sbjct 265999 TTACACC--CCACATGTCGTACTGGAGGATGCCCTGGCTGACTGGTGAGCCTTTGTACGT 265942 Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229 ||||| ||| | ||||| ||| |||||||| || |||| || ||| |||| || | Sbjct 265941 CTCGTAGGTGCCCTTCTCCTGGGCGAGCTCGCATGAGGCCTCGAGTGCACCGTAATACAG 265882 Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCAT-CA 213288 ||| || || |||| | ||||| |||| ||| || | ||| || || | || Sbjct 265881 GGTCTCGAAGATCTGGATATTGAGTTTCTGGGCGTCATCGCTGTCGAATGG-ATAACGCA 265823 Query 213289 TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT 213348 | || | || |||| ||||| ||||| || || || || ||||| | |||||||| || Sbjct 265822 TCAGTAGAAATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGGTGTCTCACGT 265763 Query 213349 T--AGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTT 213406 | |||||| || || ||| | |||||| ||| |||||| | ||| |||||| Sbjct 265762 TGGAGACTTTT-GC-CTGCTCAAGTGGGTAATGATTGACGTCGATCACTCTGTCGAGGTT 265705 Query 213407 GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTA-GCCCCCGT 213465 | ||| | |||||| ||| ||| | || | || |||| | | Sbjct 265704 TCTGGTAACAACTTTGACGACTGTCTTCAGCTTCT------TAAAGTCGTAAGTTTTTTT 265651 Query 213466 C-CTG----CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTG 213520 | ||| ||| ||| | || || ||||| |||||||| || | || | Sbjct 265650 CACTGGATCCACGAACATGTTAACTGCAATCGAGGCCAAATTGCAAACAGCAATTTCATC 265591 Query 213521 AGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTT 213580 | | | |||||||| |||||| ||||||| |||||||||| || || |||| ||| Sbjct 265590 GGGGCTCGAGTACTCCACGATCTCAGTGCACAAGTTGCTGCATTTTATCGTTCCCAAGTT 265531 Query 213581 CTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCT 213639 || || || || ||| || | ||| | || ||||| ||||||||||||| ||| |||| Sbjct 265530 CTTCTGATTGGA-TTTCCGGTTGCATGCGTCTTTGTACAGCATGTAGGGGGTCCCAGTCT 265472 Query 213640 CTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAG 213699 | | || |||| || || ||||||| | | ||||| ||| ||| ||| | Sbjct 265471 CGACTTGTGACATAAGAATTGCAGTCCAGAGATCACGAGCCTTCACCTGACGCTTGAAA- 265413 Query 213700 CTCCGGGCGTAG-CCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCC-AGACCCT 213757 || || | | |||||| | | ||||||| | | || || | |||| ||| Sbjct 265412 ---CGAGCCTCGTTCTCGTATTTTACGTAGAGATTCTCAAACTCTTCACCCCAAGA---- 265360 Query 213758 GTC---CAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGAC 213814 ||| || || ||||| ||| ||||| || ||||| || || | ||| Sbjct 265359 GTCACAAAGGCCTGGACACTCGTGGGGGCACATCAGACTCCACATACCATCCGCCAGGAC 265300 Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTC 213874 || | |||||| || || || | ||| || ||| |||||| || | | || || Sbjct 265299 TCGTTTCATGAATAGATCAGGAATCCAGAGTGCGTAGAACAGCTCACGCGCTCTATATTC 265240 Query 213875 GTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934 ||| ||| | ||| || ||||| |||| ||||||||||| |||||||| ||||| Sbjct 265239 CTCCTTTCCTGTGTTCTTCTTGAGATCGAGAACATCAAAGATGTCAGCGTGCCAGGGCTC 265180 Query 213935 CATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCAC 213979 | || |||||||| ||||| || | | || || ||||| || || Sbjct 265179 GAGATAAATGGCAAATGCGCCAGGACGTTTGTTTCCACCCTGATCAAC 265132 >seq113 Length=346302 Score = 219 bits (242), Expect = 8e-52 Identities = 845/1300 (65%), Gaps = 53/1300 (4%) Strand=Plus/Plus Query 212702 GGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGAT-ATCTCTCT 212760 |||||| |||||| ||||| | | | ||||| ||||| | | ||| ||| |||| Sbjct 256421 GGACTGGGACTGGTCGATGAAGGCCCCACGATCAGCAGCCATCTTGAGGATCATC-CTCT 256479 Query 212761 GGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGT 212820 ||| | ||||| || || || | | | | |||||||| |||||| | | ||||| Sbjct 256480 GGGGAATTTCCCAGACTGTTCTGTACAGTGCCTTGAGGTCTGCTGGGATGTTGTCGATGT 256539 Query 212821 TCTGCACAGACCCCCTGTG---TATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGC 212877 |||| | || || || ||| || | | | |||||| |||| |||||| Sbjct 256540 TCTGGATCGAGCCATTGCTCGCTATTATCTGGTTCTT---CATGTCGTCGTCCCAGAGAT 256596 Query 212878 CCCTGGTCTCC-AGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGC 212936 | | | || ||| ||| | ||| || || ||||||| ||||| ||||| || || Sbjct 256597 CAC-GCTCGGTGAGGTCCTTCAGCAGATGGGGATTGACTACTTGGAATTCACCAGACAGT 256655 Query 212937 ACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATC 212996 || | |||| ||| | ||| ||||| ||||| ||| ||||||||| |||||||| Sbjct 256656 ACACGCCTCGCGTAGATGTTGCTGGTGTAAGGCTCAATGGCCTCGTTGTTACCCAGAATT 256715 Query 212997 TGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCG 213056 || || || |||||| ||||| || |||| |||||| |||||| | ||||| | Sbjct 256716 TGGGCTGTTGAGGCTGTTGGCATTGGTGCCAGTAGGAGAGAGTTCCTAATACCGTGTTTA 256775 Query 213057 CCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACG 213116 || | || || ||||||||||| ||| || | || | ||| Sbjct 256776 GATATTTTATCCTTGAGTTCAGCCCAGTCCCAG-----AGATTTGT--TGGTGTTACACC 256828 Query 213117 TTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAG 213176 |||||||||| |||| | |||||| | ||| || || ||| | ||| | |||| Sbjct 256829 --CCACATGTCATACTGGAGGATGCCCTGGCTGACTGGTGAGCCTTTGTACGTCTCGTAG 256886 Query 213177 GGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCA 213236 | ||| | ||||| ||| |||||||| || |||| |||||| | || || | ||| || Sbjct 256887 GTGCCCTTCTCCTGGGCGAGCTCGCATGAGGCCTCGAGGGCACCATAATACAGGGTCTCG 256946 Query 213237 AATATCTCCCTGTTGAGCTTCTTGGCCTC--TGGGGACGTGAAGGGCATCAT-CATGCGT 213293 || |||| | ||||| |||| |||||| || | || || || || | ||| || Sbjct 256947 AAGATCTGGATATTGAGTTTCTGGGCCTCATTGCTGTCG--AATGG-ATAACGCATCAGT 257003 Query 213294 TGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT--AG 213351 | || |||| ||||| ||||| || || || || ||||| | ||||||| ||| || Sbjct 257004 AGAAATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGATGTCTCATGTTGGAG 257063 Query 213352 ACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGG 213411 ||| || |||||| | |||||| | ||| ||||| | ||| ||| || | | Sbjct 257064 ACTCTT-GC-CTCCTCGATTGGGTAATAATTGACATCGATAACTCTGTCGAGATTTCTTG 257121 Query 213412 TGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA---TTG-AACACGTAGCCCCCGTCC 213467 | | | |||| ||| ||| || || | ||| || | | | | | Sbjct 257122 CGACGATTTTGACGACTGTCTTCAG---CTTGTTAAAGTTGTAAGTCTTTTTCACTGGG- 257177 Query 213468 TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT 213527 | ||| ||| | || || ||||| |||||||| || || || | | | Sbjct 257178 TCCACGAACATGTTGACTGCAATCGAGGCCAAATTGCAAACAGCAACTTCATCGGGGCTC 257237 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 | |||||| | |||||| || |||| |||||||||| || || |||| ||||| || Sbjct 257238 GAGTACTCGACGATCTCAGTACACAAGTTGCTGCATTTTATCGTTCCCAAGTTCTTCTGA 257297 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || || ||| ||| | |||||||| ||||||||||| | || ||||| | || Sbjct 257298 TTGGATTTTCTATTGCATGCGTCCTTGTACAGCATGTAGGGAGTTCCAGTCTCGACTTGT 257357 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGC 213707 |||| || || ||||||| | | || || ||| ||| ||| | ||||| Sbjct 257358 GACATAAGAATTGCAGTCCAGAGCTCACGAGCTTTCACCTGACGCTTGAAA----CGGGC 257413 Query 213708 GT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTC---CAG 213763 | ||||||||||| |||||||| | |||||| | |||||| |||| || Sbjct 257414 CTCTCCCTCGTACTGTGTGTAGAGCTTCTCGAATTCCTCACCCCAG---GTGTCACATAG 257470 Query 213764 TCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCAT 213823 || ||||| ||| ||||| || ||||| | |||| | || | | ||| Sbjct 257471 GCCTGGACATTCGTGGGGGCACATCAGACTCCACACATCGTCCGCCAGAACACGTTTCAT 257530 Query 213824 GAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC-CCTGGTCCTCCTCTCGTCCACTC 213882 ||| | ||||||| ||| || ||| || || || | || || | || || || Sbjct 257531 GAATAAATCCGGGATCCAGAGTGCGTAAAAAAGTTCACGTGCTCGATAT-TCCTCTTTTC 257589 Query 213883 CAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGA 213942 | | |||||| ||||| |||| || || ||||| |||||||| ||||| | || | Sbjct 257590 CTGTGTTTTTCTTGAGATCGAGAACATCGAATATGTCAGCGTGCCAGGGCTCGAGATAAA 257649 Query 213943 TGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCAC 213979 ||||||| || || || | | || || ||||| || || Sbjct 257650 TGGCAAATGCTCCAGGACGTTTGTTTCCACCCTGATCAAC 257689 >seq47 Length=978588 Score = 84.2 bits (92), Expect = 4e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 |||||||| || || | ||| || || || | || ||||||||||| || || ||| Sbjct 561204 TACATCTCCGAATGTATATTTTCCATTGCAACTTGAAACCCGTAGAAACATCTTGCTTCA 561145 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 || || |||||| ||||| |||| ||||||||||| || || |||||||| Sbjct 561144 GTGACTTGGACTTCTTGACTGAATCGTTCCACTAGATTCTCATTCACAATTCCATCTGAT 561085 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGT 48590 ||||| || || || || || || || ||| || ||||| |||| Sbjct 561084 GCAGCGAAAAACGCTAGAACGTGGGAAATGAAGTGCCGCTCATTGT 561039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931520666785280