Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq113 147 4e-30 seq109 141 2e-28 >seq113 Length=346302 Score = 147 bits (162), Expect = 4e-30 Identities = 346/519 (67%), Gaps = 5/519 (1%) Strand=Plus/Plus Query 221750 TACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTA 221809 |||| | |||||| ||||| | ||||||||| || || || |||| || || ||||| Sbjct 257241 TACTCGACGATCTCAGTACACAAGTTGCTGCATTTTATCGTTCCCAAGTTCTTCTGATTG 257300 Query 221810 GACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCC 221869 || || | |||| ||||||||||| ||||| ||||| |||||||| | || | | Sbjct 257301 GATTTTCTATTGCATGCGTCCTTGTACAGCATGTAGGGAGTTCCAGTCTCGACTTGTGAC 257360 Query 221870 ACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTC 221929 | ||||| |||||| || | || ||||| | ||||| |||| | Sbjct 257361 ATAAGAATTGCAGTCCAGAGCTCACGAGCTTTCACCTGACGCTTGAAACGGGCCTCTCCC 257420 Query 221930 TTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGA 221989 | | ||| || |||||| | || || | ||||| | | || ||||||||| Sbjct 257421 T---CGTACTGTGTGTAGAGCTTCTCGAATTCCTCACCCCAGGTGTCACATAGGCCTGGA 257477 Query 221990 CACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGG 222049 || | ||| |||||||||||||| | || | || | | |||||| | Sbjct 257478 CATTCGTGGGGGCACATCAGACTCCACACATCGTCCGCCAGAACACGTTTCATGAATAAA 257537 Query 222050 TCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTT 222109 ||||||||||| || || | ||| || || | | || | ||||| || ||||| Sbjct 257538 TCCGGGATCCAGAGTGCGTAAAAAAGTTCACGTGCTCGATATTCCTCTTTTCCTGTGTTT 257597 Query 222110 TTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA 222169 ||| | ||||| | || || || |||||||||||||| ||||| ||||| | ||| | Sbjct 257598 TTCTTGAGATCGAGAACATCGAATATGTCAGCGTGCCAGGGCTCGAGATAAATGGCAAAT 257657 Query 222170 GCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCG 222228 || || || || ||||| |||||||||| || ||| | | | | ||| | | || Sbjct 257658 GCTCCAGGACGTTTGTTTCCACCCTGAT-CAACATAACGTGCTGTGTTATTGTAAACACG 257716 Query 222229 AAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCC 222267 ||| | ||||| || || |||||| ||| ||||| || Sbjct 257717 AAGCATGGGTACAAGCCCATTGGATATACCATTGGTACC 257755 >seq109 Length=386716 Score = 141 bits (156), Expect = 2e-28 Identities = 303/452 (67%), Gaps = 3/452 (1%) Strand=Plus/Minus Query 221750 TACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTA 221809 |||| | |||||| || || | ||||||||| || || || |||| || || ||||| Sbjct 265580 TACTCCACGATCTCAGTGCACAAGTTGCTGCATTTTATCGTTCCCAAGTTCTTCTGATTG 265521 Query 221810 GACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCC 221869 || || || ||| ||||| ||||| ||||| |||| |||||||| | || | | Sbjct 265520 GATTTCCGGTTGCATGCGTCTTTGTACAGCATGTAGGGGGTCCCAGTCTCGACTTGTGAC 265461 Query 221870 ACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTC 221929 | ||||| |||||| || | || ||||| | ||||| | ||||| || Sbjct 265460 ATAAGAATTGCAGTCCAGAGATCACGAGCCTTCACCTGACGCTTGAAACGAGCCTCGTTC 265401 Query 221930 TTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGA 221989 | | | || ||||| | ||||||| |||||| | | || ||||||||| Sbjct 265400 TCGTATTTTACG---TAGAGATTCTCAAACTCTTCACCCCAAGAGTCACAAAGGCCTGGA 265344 Query 221990 CACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGG 222049 ||| | ||| |||||||||||||| | | ||| | | |||||| || Sbjct 265343 CACTCGTGGGGGCACATCAGACTCCACATACCATCCGCCAGGACTCGTTTCATGAATAGA 265284 Query 222050 TCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTT 222109 || || ||||| || || | || || || | | | | |||||| || |||| Sbjct 265283 TCAGGAATCCAGAGTGCGTAGAACAGCTCACGCGCTCTATATTCCTCCTTTCCTGTGTTC 265224 Query 222110 TTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA 222169 ||| | ||||| | || ||||| |||||||||||||| ||||| ||||| | ||| | Sbjct 265223 TTCTTGAGATCGAGAACATCAAAGATGTCAGCGTGCCAGGGCTCGAGATAAATGGCAAAT 265164 Query 222170 GCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 ||||| || || ||||| ||||||||||| || Sbjct 265163 GCGCCAGGACGTTTGTTTCCACCCTGATCAAC 265132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928832701796480