Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq37 109 5e-19 seq17 84.2 2e-11 >seq37 Length=1171872 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||| ||||| || | || || |||||||| ||| || || |||| Sbjct 188663 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTC 188722 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| || ||| |||||||||||| | || ||| || Sbjct 188723 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 188782 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | |||||||| || || ||||||||||| ||| | |||| | | ||||| || Sbjct 188783 GCAACGTCTTATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAA 188842 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||||||||| ||| |||| Sbjct 188843 TATTCAAAAGGAATCTACTCTTCACTTGGT 188872 >seq17 Length=1605837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || | || || |||||||||||| || || | ||| Sbjct 84219 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCA 84160 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| ||||| |||||| | ||| ||| || Sbjct 84159 GACACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 84100 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 |||||| | ||||| || || || |||||||||||| || | ||| | | ||||| | Sbjct 84099 CAGAGATTGATCTTCGCTGGAAAGCAATTGGAAGATGGTCGCACACTCT--CTGATTACA 84042 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| || || || || ||||| || |||| | || | || ||||| || Sbjct 84041 ACATCCAGAAGGAGTCGACTCTTCATTTGGTCCTTCGACTTCGTGGAGGCAT 83990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425399397624918