Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq76 96.9 4e-15 >seq76 Length=671789 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || || || || || | |||||||| || || ||||| ||||| ||||||||||| || Sbjct 244905 ACGCCGATGGGCCCCATACCAGGACCCCCTCCCCCATGGGGAATGCAGAATGTCTTGTGA 244846 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| || || | || || ||| ||||| | ||| | || || ||||| || Sbjct 244845 AGATTCAGGTGCGAGACGTCACTACCGTAGTCCCCAGGTCTGCAAAGGCCCACCTGAGCG 244786 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACA 138358 || | ||| || |||||||||||||||||||| ||| ||||| || || | ||| Sbjct 244785 TTCATATTGGCCCCATCGAGATATACCTGACCCCCAGCCTCATGTACCATATCACA 244730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 ||||| || ||||||| | | |||||| ||||| | | ||||| || || |||||| Sbjct 243727 CCATGGTAGACTGCATACATTGTAGACATGTTTGCTAATAACGCTTGGGCCGTACAGATG 243668 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 ||||| || |||||||| ||||| || |||||||||| ||||| || || | |||||| Sbjct 243667 TTACTCGTAGCTTTGTCCCTTCTGATGTGCTGCTCTCGTGTTTGAAGGGCCAGTCTGTAC 243608 Query 139392 GC 139393 || Sbjct 243607 GC 243606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578990858545840